Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14a23
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc...   116   4e-27
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    30   0.33 
SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.33 
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    28   1.3  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    28   1.3  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    27   1.8  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   9.4  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   9.4  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   9.4  

>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score =  116 bits (278), Expect = 4e-27
 Identities = 69/171 (40%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
 Frame = +3

Query: 141 LMSYDTALNIQLAIARKHLDSIKNGLDFN-HDTLLLVEHKPVYTVGIRDKTPNNEILRLK 317
           L+SY+    +Q    + +L+   N ++     T++  +  PVYT+G R+ + N      K
Sbjct: 16  LVSYERVGALQNRFVQHYLNYKANKVEQPPKPTIITSQVCPVYTLGRRESSINFTKGFPK 75

Query: 318 SLGADFKKTNRGGLVTFHGPGQLVAYPIINLKYYKPSVKWYVNSLEEIGIRLCGDLGIQ- 494
              A   K  RGG  TFHGPGQ++AYPII+LK +  S + YV+ LE+  I  C   GI+ 
Sbjct: 76  ---AKVVKALRGGQTTFHGPGQILAYPIIDLKSFGLSPREYVSRLEQAIIATCKSFGIEK 132

Query: 495 ASRSPHTGVWVADN-KIAAIGVHTSRYVTTHGIAINCDIDLSWFKHIDPCG 644
           A  + +TGVWV +N KIAAIG+H  R +T+HG+A+N   DL +F +I  CG
Sbjct: 133 AHTTKNTGVWVTENDKIAAIGIHLRRNITSHGLALNVSTDLKYFNYIVGCG 183


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 501 CWLEFLS-HHTILCQFLPNYLHTTSHLVYSTSNL 403
           C L FL+  +T+LC  +P ++HT ++L ++ + +
Sbjct: 30  CALAFLTLRYTLLCYSIPIHIHTVNYLAFTIARM 63


>SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 120

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 10/30 (33%), Positives = 22/30 (73%)
 Frame = -3

Query: 311 PENFIVWCLVSYTYCINRFMFYK*KGIMIK 222
           PE FI WC+++YT+ +  +M  + +G++++
Sbjct: 20  PELFITWCVMTYTFGVAGYMLGQ-RGLLVQ 48


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 138 PASKF*PF*KFVSLVK*IFTVFIIRSNMVIPFDK 37
           P   F  F  F+SL+  +FT FI+ +N  IP  K
Sbjct: 61  PKRWFWHFYAFISLLNPLFTFFILNTNFPIPIFK 94


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 147 SYDTALNIQLAIARKHLDSIKNGL 218
           +Y+TA   +L +AR++LD +KN L
Sbjct: 63  TYETAAEKRLRLAREYLDEVKNEL 86


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 546 AIGVHTSRYVTTHGIAINCDIDLSWFKHIDPCG 644
           +IGV  S  V  H  A+N D  +  +K+ + CG
Sbjct: 307 SIGVDPSTKVIVHSDALNVDRCIELYKYCEKCG 339


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 451 KLFTYHFTLGL*YFKFIIGYA 389
           KLF YHFT  + YF     YA
Sbjct: 2   KLFLYHFTFIVYYFIISFSYA 22


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 13   NKYKLSSLFIKWNYHITAYYEN 78
            NK+ L  LF KW+ ++T+Y+E+
Sbjct: 1199 NKFVL--LFSKWHKYLTSYFES 1218


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 486 LSHHTILCQFLPNYLHTTSHLVYSTSNL*LGMQLID 379
           ++  T+   F P ++ +TSH V++ S+    +Q+ID
Sbjct: 230 VTRSTLTFSFYPKHVFSTSHYVFAISS--SSLQIID 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,972
Number of Sequences: 5004
Number of extensions: 61644
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)