Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14a23
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68270-8|CAC35869.1|  309|Caenorhabditis elegans Hypothetical pr...   127   6e-30
Z68270-9|CAE54911.1|  307|Caenorhabditis elegans Hypothetical pr...   124   5e-29
AF099916-1|AAC68775.1|  120|Caenorhabditis elegans Spt transcrip...    29   2.8  

>Z68270-8|CAC35869.1|  309|Caenorhabditis elegans Hypothetical
           protein ZC410.7b protein.
          Length = 309

 Score =  127 bits (307), Expect = 6e-30
 Identities = 74/162 (45%), Positives = 99/162 (61%), Gaps = 2/162 (1%)
 Frame = +3

Query: 165 NIQLAIARKHLDSIKNGLDFNHDTLLLVEHKPVYTVGIRDKT-PNNEILRLKSLGADFKK 341
           N+   I R HL         + + +L +EH PVYTVGIR K     E  RL  LGA+F +
Sbjct: 100 NVAAPIPR-HLVKANKSETHSLNFILALEHTPVYTVGIRSKGYTKEEETRLMRLGAEFHR 158

Query: 342 TNRGGLVTFHGPGQLVAYPIINLKYYKPSVKWYVNSLEEIGIRLCGDLGIQASRSPHTGV 521
           T+RGGL+TFHGPGQLV YPI +++  + S+K    + E  GI+  G       R+ +TGV
Sbjct: 159 TSRGGLITFHGPGQLVLYPICDVR--RISIKQLDAATEGFGIKNVG-------RTANTGV 209

Query: 522 WVA-DNKIAAIGVHTSRYVTTHGIAINCDIDLSWFKHIDPCG 644
           WV+ + K+AAIG+  S  V+ HGIAINC+ DL WF +I  CG
Sbjct: 210 WVSNERKLAAIGIAVSGGVSYHGIAINCNTDLRWFDNIVGCG 251


>Z68270-9|CAE54911.1|  307|Caenorhabditis elegans Hypothetical
           protein ZC410.7c protein.
          Length = 307

 Score =  124 bits (299), Expect = 5e-29
 Identities = 74/162 (45%), Positives = 99/162 (61%), Gaps = 2/162 (1%)
 Frame = +3

Query: 165 NIQLAIARKHLDSIKNGLDFNHDTLLLVEHKPVYTVGIRDKT-PNNEILRLKSLGADFKK 341
           N+   I R HL         + + +L +EH PVYTVGIR K     E  RL  LGA+F +
Sbjct: 100 NVAAPIPR-HLVKANKSETHSLNFILALEHTPVYTVGIRSKGYTKEEETRLMRLGAEFHR 158

Query: 342 TNRGGLVTFHGPGQLVAYPIINLKYYKPSVKWYVNSLEEIGIRLCGDLGIQASRSPHTGV 521
           T+RGGL+TFHGPGQLV YPI +++  + S+K    + E  GI+  G       R+ +TGV
Sbjct: 159 TSRGGLITFHGPGQLVLYPICDVR--RISIKQL--ATEGFGIKNVG-------RTANTGV 207

Query: 522 WVA-DNKIAAIGVHTSRYVTTHGIAINCDIDLSWFKHIDPCG 644
           WV+ + K+AAIG+  S  V+ HGIAINC+ DL WF +I  CG
Sbjct: 208 WVSNERKLAAIGIAVSGGVSYHGIAINCNTDLRWFDNIVGCG 249


>AF099916-1|AAC68775.1|  120|Caenorhabditis elegans Spt
           transcription factor familyprotein 4 protein.
          Length = 120

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 255 KPVYTVGIRDKTPNNEILRLKSLGADFKKTNR 350
           K +Y + +    PNN +  LKSLG  +K   R
Sbjct: 81  KGMYAISVSGVLPNNIVSELKSLGVRYKPNQR 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,629,021
Number of Sequences: 27780
Number of extensions: 338802
Number of successful extensions: 708
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)