Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14a22
         (110 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   1.4  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   1.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   1.4  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    20   2.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    19   7.4  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    18   9.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    18   9.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    18   9.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    18   9.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    18   9.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    18   9.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 71  GIQLNIFLDKK 103
           G ++NIFLDKK
Sbjct: 194 GEEVNIFLDKK 204


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 104 FSYQEKYLIVFLKSINYNNM*QLIHYSI 21
           F++++KY  VFL  ++ N   Q + Y +
Sbjct: 91  FAFKDKYKQVFLGGVDKNT--QFLRYFV 116


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 104 FSYQEKYLIVFLKSINYNNM*QLIHYSI 21
           F++++KY  VFL  ++ N   Q + Y +
Sbjct: 91  FAFKDKYKQVFLGGVDKNT--QFLRYFV 116


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 59  NYNNM*QLIHYSIS 18
           NYNN  + +HY+I+
Sbjct: 326 NYNNNYKPLHYNIN 339


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 59  NYNNM*QLIHYSIS 18
           NYNN  + ++Y+I+
Sbjct: 100 NYNNYNKKLYYNIN 113


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 59  NYNNM*QLIHYSIS 18
           NYNN  + ++Y+I+
Sbjct: 99  NYNNNCKKLYYNIN 112


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 59  NYNNM*QLIHYSIS 18
           NYNN  + ++Y+I+
Sbjct: 104 NYNNNCKKLYYNIN 117


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 59  NYNNM*QLIHYSIS 18
           NYNN  + ++Y+I+
Sbjct: 104 NYNNNCKKLYYNIN 117


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 59  NYNNM*QLIHYSIS 18
           NYNN  + ++Y+I+
Sbjct: 104 NYNNNCKKLYYNIN 117


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 59  NYNNM*QLIHYSIS 18
           NYNN  + ++Y+I+
Sbjct: 104 NYNNNCKKLYYNIN 117


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 59  NYNNM*QLIHYSIS 18
           NYNN  + ++Y+I+
Sbjct: 343 NYNNNYKKLYYNIN 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,210
Number of Sequences: 438
Number of extensions: 263
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 17
effective length of database: 138,897
effective search space used:  2639043
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)