Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14a21
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 202 3e-53
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 67 2e-12
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 58 9e-10
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 35 0.010
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 29 0.64
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 27 2.0
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 26 6.0
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 6.0
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 26 6.0
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 25 7.9
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 202 bits (494), Expect = 3e-53
Identities = 94/172 (54%), Positives = 123/172 (71%), Gaps = 1/172 (0%)
Frame = +3
Query: 189 PAETLAHFNTKDET-GKEIKIQFDHGTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKI 365
P +L N DET K I+ +HGTTTL FRY+ G+++ VDSRA+ G I SQ++KK+
Sbjct: 36 PQSSLYLRNLTDETKNKHCLIKMNHGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKV 95
Query: 366 VEINDYLLGTLAGGAADCVYWDRVLAKQCRLYELRNRERISVAAASKLMANMVYNYKXXX 545
+EIN YLLGTLAGGAADC +W+ VL +CRL++LRN+E ISV+AASK+++N+ Y+YK
Sbjct: 96 IEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNITYSYKGYG 155
Query: 546 XXXXXXXXXIDKRGAQLYYVDSEGTRTPGKVFSVGSGSVYAFGVLDSGYSWD 701
K G LYY+DS+GTR G +FSVGSGS +A+GVLDSGY WD
Sbjct: 156 LSMGTMLAGTGKGGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWD 207
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 67.3 bits (157), Expect = 2e-12
Identities = 41/144 (28%), Positives = 65/144 (45%)
Frame = +3
Query: 261 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 440
GTT RYK GV+LA DSR T G +I ++ K+ ++ D + +G AAD +L
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 441 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXXIDKRGAQLYYVDSEGT 620
+Y ++ SV A+ L + M Y K +K G +Y + G+
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGS 143
Query: 621 RTPGKVFSVGSGSVYAFGVLDSGY 692
+ GSGS + +G D+ +
Sbjct: 144 LHKQPLAIGGSGSAFIYGFCDANF 167
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 58.4 bits (135), Expect = 9e-10
Identities = 38/147 (25%), Positives = 68/147 (46%)
Frame = +3
Query: 261 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 440
GTT +G K ++L D+RAT G I ++ KK+ I+ + AG AAD + ++
Sbjct: 35 GTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMI 94
Query: 441 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXXIDKRGAQLYYVDSEGT 620
+ L+ L + V A ++ ++ Y+ D +G L+ + + G+
Sbjct: 95 SSNIELHSLYTNRKPRVVTALTMLKQHLFRYQ-GHIGAYLVLGGYDCKGPHLFTIAAHGS 153
Query: 621 RTPGKVFSVGSGSVYAFGVLDSGYSWD 701
++GSGS+ A VL++ Y D
Sbjct: 154 SDKLPYVALGSGSLAAISVLETKYQPD 180
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 35.1 bits (77), Expect = 0.010
Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Frame = +3
Query: 261 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 440
G+T +G + K V+L V+ R T + S S++K+ EI+ ++ ++G AD
Sbjct: 34 GSTAIGVKTKDAVVLGVEKRLTS-PLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHA 92
Query: 441 AKQCRLYELRNRERISVAAASKLMANMVYNY----------KXXXXXXXXXXXXIDKRGA 590
Q + + E + + ++ + ++ + ID+ G
Sbjct: 93 RVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHGP 152
Query: 591 QLYYVDSEGTRTPGKVFSVGSGS 659
QLY+ + GT + ++GSGS
Sbjct: 153 QLYHSEPSGTYFRYEAKAIGSGS 175
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 29.1 bits (62), Expect = 0.64
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 6 IHQDFIENSFKQKMALLDFCRLNE-KINLKPVDSLASFNNDITGYSENFVNSAQLASPPF 182
+ +D E+S K ++L+ N +I+ K DSL S NN GY+ + V + S P
Sbjct: 524 VPEDKSEDSVPSKSSVLEDKHENSVEIDKKADDSLPS-NNKTEGYTPSVVREEKNYSEPN 582
Query: 183 ANPA 194
A+P+
Sbjct: 583 ASPS 586
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 186 NPAETLAHFNTKDETGKEIKIQFDHGTT 269
NP ET A + +++T E + FDHG++
Sbjct: 6 NPNETEASEDAENDTQSESDLSFDHGSS 33
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 488 RNTLPIPKLIETALLCEYSVPVDTVCCTTSESTKQIV 378
+N +PKL+E S P V CTTSES + IV
Sbjct: 496 KNGNDLPKLVEGLKRLSKSDPC--VLCTTSESGEHIV 530
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 93 PVDSLASFNNDITGYSENFVNSA 161
P+D + S + D+ GYS++ V+ A
Sbjct: 249 PIDEVESMDEDVDGYSDHSVSVA 271
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 488 RNTLPIPKLIETALLCEYSVPVDTVCCTTSESTKQIV 378
+N +PKL+E S P V CTTSES + IV
Sbjct: 496 KNGNDLPKLVEGLKRLSKSDPC--VLCTTSESGEHIV 530
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 226 SSFVLKCAKVSAGFANGGEAS*ALFTKFSL*PVMSLLNDARESTGFKL 83
S+F+ K+ + GG A ALFTK ++ P + + S G +
Sbjct: 516 SAFITPENKLMTAYHEGGHALVALFTKNAMRPYKATIMPRGSSLGMTI 563
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,484
Number of Sequences: 5004
Number of extensions: 54802
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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