Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14a21
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 100 2e-21
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 62 3e-10
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 61 7e-10
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 55 6e-08
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 49 3e-06
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 31 1.2
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568... 28 6.2
12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831 28 8.3
07_01_1044 - 9104013-9104138,9104293-9104467,9105134-9105183,910... 28 8.3
02_05_0444 - 29073740-29073844,29074417-29074725,29077910-290779... 28 8.3
02_02_0402 - 9852407-9853519 28 8.3
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 99.5 bits (237), Expect = 2e-21
Identities = 46/86 (53%), Positives = 60/86 (69%)
Frame = +3
Query: 441 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXXIDKRGAQLYYVDSEGT 620
A QCRL+EL N+ RIS+A ASKL+AN++Y+Y+ D++G LYYVDSEG
Sbjct: 66 AFQCRLHELANKRRISIAGASKLLANILYSYRGMGLSIGTMIAGWDEKGPGLYYVDSEGA 125
Query: 621 RTPGKVFSVGSGSVYAFGVLDSGYSW 698
R G FSVGSGS+YA+G+LD GY +
Sbjct: 126 RLMGSRFSVGSGSLYAYGILDEGYRY 151
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 62.5 bits (145), Expect = 3e-10
Identities = 39/141 (27%), Positives = 64/141 (45%)
Frame = +3
Query: 261 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 440
GTT +G Y GGV+LA DSR + G ++ +++ KI ++ D + +G AAD +
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYV 84
Query: 441 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXXIDKRGAQLYYVDSEGT 620
+ ++ + +V A+ L+ + Y K G Q++ V GT
Sbjct: 85 RYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLGGT 144
Query: 621 RTPGKVFSVGSGSVYAFGVLD 683
GSGS Y +G+LD
Sbjct: 145 ILRQPFAIGGSGSSYLYGLLD 165
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 61.3 bits (142), Expect = 7e-10
Identities = 39/141 (27%), Positives = 64/141 (45%)
Frame = +3
Query: 261 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 440
GTT +G Y GGV+LA DSR + G ++ +++ KI ++ D + +G AAD +
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYV 84
Query: 441 AKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXXIDKRGAQLYYVDSEGT 620
+ ++ + +V A+ L+ + Y K G Q++ V GT
Sbjct: 85 RYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLGGT 144
Query: 621 RTPGKVFSVGSGSVYAFGVLD 683
GSGS Y +G+LD
Sbjct: 145 ILRQPFAIGGSGSSYLYGLLD 165
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 54.8 bits (126), Expect = 6e-08
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Frame = +3
Query: 261 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKI--VEINDYLLGTLAGGAADCVYWDR 434
GTT +G ++ GV+L D+RAT G + ++ +KI + N Y G AG AAD
Sbjct: 38 GTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCG--AGTAADTEAVTD 95
Query: 435 VLAKQCRLYELRNRERISVAAASKLMANMVYNYKXXXXXXXXXXXXIDKRGAQLYYVDSE 614
+++ Q +L+ V + L+ + +++Y+ +D G L+ V
Sbjct: 96 MVSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQ-GHVSAALVLGGVDVTGPHLHTVYPH 154
Query: 615 GTRTPGKVFSVGSGSVYAFGVLDSGY 692
G+ ++GSGS+ A V +S Y
Sbjct: 155 GSTDTLPFATMGSGSLAAMSVFESKY 180
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 49.2 bits (112), Expect = 3e-06
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Frame = +3
Query: 261 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVL 440
G+T +G + K GV+LAV+ R T + S++KI+EI++++ ++G AD R L
Sbjct: 47 GSTAIGLKTKDGVVLAVEKRVTS-PLLEPSSVEKIMEIDEHIGCAMSGLIADA----RTL 101
Query: 441 AKQCRLYELRNR----ERISVAAASKLMANMVYNYKXXXXXXXXXXXXI-------DKRG 587
+ R+ +R E ++V + ++ + ++ + + D+ G
Sbjct: 102 VEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHDENG 161
Query: 588 AQLYYVDSEGTRTPGKVFSVGSGSVYAFGVLDSGYS 695
LYY D GT ++GSGS A L Y+
Sbjct: 162 PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN 197
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +3
Query: 261 GTTTLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAAD 416
G++ + +YK GV++A D+ A+ G + +S+++I + + L +G +D
Sbjct: 369 GSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEFSD 420
>01_06_1696 +
39256171-39256393,39256513-39256595,39256692-39256831,
39256882-39257398,39257518-39257565,39257832-39258006,
39258122-39258234,39258329-39258425,39258579-39258798,
39258985-39259144,39259233-39259646
Length = 729
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 201 LAHFNTKDETGKEIKIQFDHGTTTLGFRYKGGVLLAVDSRAT 326
LA + + GK +++QF LGFRY+ G L+A D T
Sbjct: 514 LARLRSILDEGKSLQLQFP--AEDLGFRYELGALVAEDCAET 553
>12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831
Length = 512
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 696 SCIQSQVHQKHTQNLSPLRTPCLECEY 616
SC+ S +K N P+R P L C+Y
Sbjct: 222 SCLTSYTQEKLQTNKVPIRCPQLRCKY 248
>07_01_1044 -
9104013-9104138,9104293-9104467,9105134-9105183,
9105271-9105297,9107490-9107535,9107679-9107734,
9108070-9108365,9108471-9109947
Length = 750
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 57 DFCRLNEKINLKPVDSLASFNNDITGYSEN 146
D +NE + PV +L S+N ITGY+ N
Sbjct: 290 DLDTVNELFDHMPVKNLVSWNAMITGYNHN 319
>02_05_0444 -
29073740-29073844,29074417-29074725,29077910-29077981,
29078541-29078633,29078825-29078982,29079247-29079415,
29080204-29081241,29081632-29081759,29081926-29081985,
29082033-29083077
Length = 1058
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +3
Query: 270 TLGFRYKGGVLLAVDSRATGGQFIGSQSMKKIVEINDYLLGTLAGGAADCVYWDRVLAKQ 449
+LG K VL+ TG + ++ + + V+ + +L T AA +R+
Sbjct: 481 SLGLNKKRPVLIIQGPPGTGKTVLLTELIVRAVQQGENVLVTAPSNAAVDNMVERLSNTG 540
Query: 450 CRLYELRNRERISVAAASKLMANMV 524
+ + N RIS + ASK +A +V
Sbjct: 541 LNIVRVGNPARISPSVASKSLAEIV 565
>02_02_0402 - 9852407-9853519
Length = 370
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = -1
Query: 486 KYAPYSEAHR--DGIALRVLCPSRHS 415
+YA E HR DG+ LRV+ PSRHS
Sbjct: 323 EYAVSPECHRGEDGV-LRVIAPSRHS 347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,359,435
Number of Sequences: 37544
Number of extensions: 368879
Number of successful extensions: 947
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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