Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14a14
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    28   1.4  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    27   1.8  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    27   1.8  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    27   2.4  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    27   3.2  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.5  
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...    25   7.5  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    25   9.9  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   9.9  

>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 511 LLTFSIIKPGVWWMNLQQKQTLKKFIY*ISFRCILYVWCLKTIL 642
           ++TF+   PG W  N+  K   ++F    S+R +  +W +  IL
Sbjct: 572 VITFTHYMPGWWSDNMHSKAVQQEFCSLYSYRIVNLLWEILGIL 615


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 54  DYTYFCQPQKS*SLNMFIAVYLFIIIVCIVYFEKCLRRN 170
           DY +F  P  S S+   + VYL I +  +++ EKC + N
Sbjct: 76  DYLFF-SPPFSLSIGPSLLVYLSIAVSYMLWVEKCYQMN 113


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/77 (19%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +3

Query: 321 KKVYAVTDPEDINTVANLSMEKSYIYGFSRPWLGDGLFTADVLTWRNNRRLLNQAFKHTI 500
           + + + + P D + +   ++ +S +  ++  +LG    T   ++W     L+N +FK T+
Sbjct: 307 RSIISCSLPRDRSPITKTTVLRSGVPVYT--FLGPKCLTDGSVSWERLWVLINDSFKRTL 364

Query: 501 -LDGFVDVFNNQARSLV 548
            +D ++D   N   +++
Sbjct: 365 DMDAYLDRLKNSLAAVI 381


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 426 GLFTADVLTWRNNRRLLNQAFKHTILDGFVD 518
           G+ T ++LT +N + +L++ F++ +LD   D
Sbjct: 186 GIPTEEILTSQNTQAMLHKLFENNVLDNVKD 216


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 590 YINFFKVCFCCKFIHQTPGLIIEN 519
           YI    VCFCC FI  T    I N
Sbjct: 3   YIKCRYVCFCCAFISNTTSKSIFN 26


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 379 WKKVTSMASRGLGWVTVCSLQMF*HGETTEDF 474
           W    +M   GL WV VC      H ET  DF
Sbjct: 265 WDFWINMIWAGLTWVIVCFTMPETHSETLLDF 296


>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 618 VKNATKAYLIYKFFQGLLLLQVHPPDSW 535
           + +AT +YLI + + G  LLQ+   DSW
Sbjct: 184 ITDATVSYLIQQVYAGAQLLQIF--DSW 209


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 1  DSLHSS*VCRGSLRCGD 51
          DS H S  C+GSL C D
Sbjct: 15 DSAHPSRKCKGSLDCND 31


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 194 SRQFRKFRITSQTFLEID-DADNNYEQVYRYKHVEASAFLWLTKI 63
           S+ FR  R  S TF++ID + D+  E      +     F+W  KI
Sbjct: 398 SKDFRPKREESSTFMDIDVEFDDELEGQSLTHYESFMMFVWKKKI 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,065
Number of Sequences: 5004
Number of extensions: 63382
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)