Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14a13
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...   178   5e-47
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    27   0.23 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    26   0.30 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.5  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   8.5  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score =  178 bits (433), Expect = 5e-47
 Identities = 87/211 (41%), Positives = 134/211 (63%), Gaps = 2/211 (0%)
 Frame = +3

Query: 42  LTAAIFVIIVALVYLYSTRTFRYWEKRGIKHDKPVPFFGTDSEGYLLRKSMTQTAVDAYL 221
           +   I V+ +AL Y Y T TF +W+ RG+   KPVPFFGT  +  L++KS      D Y 
Sbjct: 7   ILCGIAVLFLALYY-YLTSTFDFWKSRGVVGPKPVPFFGTTKDLILVKKSTAHFVKDIYE 65

Query: 222 KYPNEKVIGFFRSSRPELIIRDPDIIKRILTTDFAYFYPRGLNPHKKVIEPLMRNLFFAD 401
           KY NE ++G + +  P L++ DP++IK IL  DF+ F  RGL   ++  EPL  +L   +
Sbjct: 66  KYKNEPMVGLYATRSPFLLLNDPELIKDILIRDFSKFANRGLGVFERT-EPLSPHLLNLE 124

Query: 402 GDLWRLLRQRMTPAFTSGKLRAMFPLVVERAERLQSRTLEI--ASQPLDARELMARYTTD 575
            + WR LR R++P FTSGKL+ MF L++E +  L++   ++   ++P++ REL AR+TTD
Sbjct: 125 VERWRPLRSRLSPIFTSGKLKEMFYLIIECSLNLETYLDKLIEKNEPIECRELTARFTTD 184

Query: 576 FIGACGFGLDADSLNDEDSAFRKLGAAIFNI 668
            IG+C FG+D  S+ +E+S FR++G  +F +
Sbjct: 185 VIGSCAFGIDMSSMTNENSEFRRMGREVFAV 215


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 15/72 (20%), Positives = 27/72 (37%)
 Frame = +3

Query: 387 LFFADGDLWRLLRQRMTPAFTSGKLRAMFPLVVERAERLQSRTLEIASQPLDARELMARY 566
           L  + G  WR  R+ + P F    L++   L    A  +  +  +   +  D    M+  
Sbjct: 126 LLISTGQKWRNHRKLIAPTFHLNVLKSFIDLFNANARSVVEKMRKENGKEFDCHNYMSEL 185

Query: 567 TTDFIGACGFGL 602
           T D +     G+
Sbjct: 186 TVDILLETAMGV 197


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 196 PKLLWMHISNTPMKKSSVSSDPQ 264
           P+LL M   NTP K+S   S PQ
Sbjct: 350 PRLLVMRRYNTPSKRSDYDSRPQ 372


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 198 GSCFF*VDIPLNRCRRRVQA 139
           G C   +++P N  RRRV+A
Sbjct: 393 GDCSSLLNLPGNDARRRVEA 412


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 405 PHQRKTGYASTAQLPFYVDSV 343
           PHQ +  Y +  Q+P    SV
Sbjct: 21  PHQHQQHYGAAVQVPQQTQSV 41


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 489 FPRPEETW 466
           FPRPE TW
Sbjct: 49  FPRPEITW 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,252
Number of Sequences: 438
Number of extensions: 3910
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)