Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14a10
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0037 - 12613686-12614318,12614792-12614878,12614985-126151...    32   0.52 
05_04_0454 + 21383068-21384525                                         29   3.7  
03_05_1115 + 30506986-30507396                                         28   6.4  

>12_02_0037 -
           12613686-12614318,12614792-12614878,12614985-12615176,
           12617246-12617371,12617479-12617565,12617994-12618458,
           12618868-12618947,12619739-12619751
          Length = 560

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 587 GVLLTRSSAAPTFGTTDKATMYLAQYGYLSPSVRNPS 697
           G+LL        FGT   AT +  Q G+  P +RNPS
Sbjct: 166 GLLLLAYGRMVFFGTVSNATEFFTQSGFPCPHLRNPS 202


>05_04_0454 + 21383068-21384525
          Length = 485

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 616 SGATPRE*DSGSRHRP*NPQAAPHSHHCHNAP*NSFRILNYSH 488
           SG TPR  ++ +R RP  P    + ++ H+      ++ NYSH
Sbjct: 246 SGGTPRNNNNNNRRRPRRPMRQGYKYNGHDQR-GQQQVNNYSH 287


>03_05_1115 + 30506986-30507396
          Length = 136

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -3

Query: 628 TEGWSGATPRE*DSGSRHRP*NPQAAPHSHHCHNAP 521
           T  W         S S   P +P+AAP  HH H AP
Sbjct: 94  TASWKQRRRASGSSSSSSSP-SPRAAPERHHHHRAP 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,178,251
Number of Sequences: 37544
Number of extensions: 285341
Number of successful extensions: 889
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)