Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14a03
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical ... 111 5e-25
Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical pr... 107 8e-24
AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical ... 54 8e-08
AC006720-3|AAF60447.1| 159|Caenorhabditis elegans Hypothetical ... 30 1.9
AC024836-1|AAK39347.2| 475|Caenorhabditis elegans Hypothetical ... 29 3.4
U41540-2|AAK39230.1| 444|Caenorhabditis elegans Suppressor/enha... 28 5.9
U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protei... 28 5.9
AL132841-2|CAB60332.1| 469|Caenorhabditis elegans Hypothetical ... 28 5.9
AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin SE... 28 5.9
>AC024832-6|AAL27256.1| 459|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1a protein.
Length = 459
Score = 111 bits (267), Expect = 5e-25
Identities = 61/147 (41%), Positives = 82/147 (55%), Gaps = 1/147 (0%)
Frame = +1
Query: 289 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLP-FCTNATDSTVTGLLPGNFKVDCD 465
+ST++R+MYA +L T + CI L PG+ N+L + FC + + C
Sbjct: 35 SSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCA 85
Query: 466 EAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXXXXXX 645
A G+ AVYR+ AT F+LL LIMIGVK SKD R+ IQNGFW KYL++
Sbjct: 86 HATGFQAVYRVCAATASFYLLFMLIMIGVKDSKDGRSSIQNGFWFFKYLILGALIVGFFF 145
Query: 646 XXXXXXASTWMVFGMIGGFCYIVIQLI 726
A+ M G+IGGF +I+IQLI
Sbjct: 146 IRSESLATPLMYIGLIGGFMFILIQLI 172
>Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical
protein R11H6.2 protein.
Length = 442
Score = 107 bits (257), Expect = 8e-24
Identities = 57/146 (39%), Positives = 80/146 (54%)
Frame = +1
Query: 289 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPGNFKVDCDE 468
NST++R+MYALML+ T + + L PG+ +L + + + + V+C+
Sbjct: 35 NSTTTRIMYALMLISATFMAVVMLLPGVQKKLVENKWLCDGLNEYAG--------VNCEH 86
Query: 469 AVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXXXXXXX 648
A+GY AVYR+ FF L L+M GV SSKD R+ IQNGFW KYLL+
Sbjct: 87 AIGYQAVYRVCAGAASFFFLFMLLMFGVSSSKDGRSSIQNGFWFFKYLLMFGIIGGFFFI 146
Query: 649 XXXXXASTWMVFGMIGGFCYIVIQLI 726
A+ M GM+G F +I+IQLI
Sbjct: 147 GSETLATPLMYIGMLGAFLFILIQLI 172
>AC024832-7|AAL27257.1| 389|Caenorhabditis elegans Hypothetical
protein Y57E12AL.1b protein.
Length = 389
Score = 54.4 bits (125), Expect = 8e-08
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +1
Query: 289 NSTSSRLMYALMLVLVTIVCCITLAPGLHNEL-QKLPFCTNATDSTVTGLLPGNFKVDCD 465
+ST++R+MYA +L T + CI L PG+ N+L + FC + + C
Sbjct: 35 SSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCA 85
Query: 466 EAVGYLAVYRITFATCLFFLLMALIM 543
A G+ AVYR+ AT F+LL LI+
Sbjct: 86 HATGFQAVYRVCAATASFYLLFILIV 111
>AC006720-3|AAF60447.1| 159|Caenorhabditis elegans Hypothetical
protein Y17G9B.6 protein.
Length = 159
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 247 CCHSNTPAVLQNKGPTLHPFLVFNSHF 167
C HSNTP+++ L PFL SHF
Sbjct: 84 CYHSNTPSLVSLFFSHLQPFLAIFSHF 110
>AC024836-1|AAK39347.2| 475|Caenorhabditis elegans Hypothetical
protein Y59E1A.1 protein.
Length = 475
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -1
Query: 278 GHAEQHSEQAVLPQQHASCAAEQRPNTAPISSF*LSLCVDCVVCFMYY 135
G+ +++ +A +PQ A C A+++ + SS + C+ CF YY
Sbjct: 419 GYITENTSKASMPQSVAGCLAKEKDD----SSTPMCALFFCLFCFTYY 462
>U41540-2|AAK39230.1| 444|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein12 protein.
Length = 444
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 252 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 350
LFT ++ +L F + PS + G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177
>U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protein
protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 252 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 350
LFT ++ +L F + PS + G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177
>AL132841-2|CAB60332.1| 469|Caenorhabditis elegans Hypothetical
protein Y15E3A.4 protein.
Length = 469
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -2
Query: 220 LQNKGPTLHPFLVFNSHFVLIVLSVLCTTIYIPSNKYLYFDII 92
++ KG TL PFL ++++ + LC + + F +I
Sbjct: 1 MKEKGSTLVPFLADRQRYIILAIGTLCIAAIASNMTVINFTMI 43
>AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin
SEL-12 protein.
Length = 444
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 252 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 350
LFT ++ +L F + PS + G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,022,464
Number of Sequences: 27780
Number of extensions: 369393
Number of successful extensions: 1007
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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