Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13p20
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.1  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   5.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.2  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   9.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.6  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 437 PCNTYWVDHPGK 472
           P N Y++ HPGK
Sbjct: 141 PYNNYYIWHPGK 152


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 437 PCNTYWVDHPGK 472
           P N Y++ HPGK
Sbjct: 141 PYNNYYIWHPGK 152


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 467 QDDQPNKCYKDC 432
           QDDQ  KCY  C
Sbjct: 50  QDDQNLKCYLKC 61


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 540 IEDAPDDHHDEQTLDLKH 593
           + +  +D  D QTL+LKH
Sbjct: 51  MREETEDAEDTQTLNLKH 68


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 27  IEEVPVIYPKDTLF*FKCFP 86
           IEE P +Y ++  F   C P
Sbjct: 419 IEEKPFVYVREIAFSESCLP 438



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 22 NKLKKYL*SIPKILSFNLN 78
          NK KKY       L+FNLN
Sbjct: 43 NKSKKYFEQTLNELNFNLN 61


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +1

Query: 151 FKLYQ*QYNHLTRGYETLKRIFVAYCAPDRSEAC 252
           F+L +   +H     +T+ RI    C    + AC
Sbjct: 12  FRLSKVMLDHTINSKKTIMRILKEVCVLQANRAC 45


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 487 SVRPRFSRMINPISVTRTASREKKIILAHQ*PPVP 383
           SVRP+F  M N   ++  +  +  ++   Q  PVP
Sbjct: 208 SVRPKFPSMDNINGLSTESKADLPLLCPAQGFPVP 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,925
Number of Sequences: 438
Number of extensions: 2504
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)