Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13p13
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   4.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 240 SCGASWNRRFC 208
           +CG  WN R+C
Sbjct: 138 TCGNPWNTRYC 148


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 240 SCGASWNRRFC 208
           +CG  WN R+C
Sbjct: 191 TCGNPWNTRYC 201


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 297 LH*MENYRYQ*EQKNYECLCRK 362
           +H   NY+Y     NY   C+K
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKK 111


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 297 LH*MENYRYQ*EQKNYECLCRK 362
           +H   NY+Y     NY   C+K
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKK 111


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 297 LH*MENYRYQ*EQKNYECLCRK 362
           +H   NY+Y     NY   C+K
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKK 111


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 297 LH*MENYRYQ*EQKNYECLCRK 362
           +H   NY+Y     NY   C+K
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKK 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,290
Number of Sequences: 438
Number of extensions: 3166
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)