Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13p03
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    28   0.099
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    28   0.099
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    28   0.099
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 27.9 bits (59), Expect = 0.099
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 652 PIVPKREVIPPTGPTP-PNNCISC 584
           P+  KRE  PPTG T  PN  ++C
Sbjct: 404 PVTQKREGGPPTGATTGPNEIVTC 427


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 0.099
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 652 PIVPKREVIPPTGPTP-PNNCISC 584
           P+  KRE  PPTG T  PN  ++C
Sbjct: 424 PVTQKREGGPPTGATTGPNEIVTC 447


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 0.099
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 652 PIVPKREVIPPTGPTP-PNNCISC 584
           P+  KRE  PPTG T  PN  ++C
Sbjct: 373 PVTQKREGGPPTGATTGPNEIVTC 396


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 640 KREVIPPTGPTP-PNNCISC 584
           KRE  PPTG T  PN  ++C
Sbjct: 394 KREGGPPTGATTGPNEIVTC 413


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 588 AVVETYC*VNYVFHDLAHHY 529
           AV +T C  NYV  D  H Y
Sbjct: 529 AVKDTXCDPNYVVPDSEHGY 548


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 315 QPPP*FGLSNKSA*ENLLLGKHTRAPS 235
           QPPP FG+S  S      L    R+P+
Sbjct: 379 QPPPNFGVSQVSPVSMSALVSAVRSPA 405


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 646  VPKREVIPPTGPTP 605
            VP+++ +PP+ P P
Sbjct: 1279 VPQQQQLPPSSPQP 1292


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 155 TSPKTRRIAKQCSRHFTMICSVTVNP 78
           TSP T   +     H    CSVT +P
Sbjct: 330 TSPMTSTKSTIVRNHLNSTCSVTNSP 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,814
Number of Sequences: 438
Number of extensions: 3859
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)