Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13n08
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   1.9  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   2.6  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   2.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.6  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   2.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.5  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   4.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   4.5  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 143 VWVLIVALLLPNVGGWLSSISVMGQVS 223
           VW+  ++L LP + GW S     G VS
Sbjct: 22  VWIYALSLSLPPLFGWGSYGPEAGNVS 48


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 119 KIYTNIMRVWVLIVALLLPNVGGW 190
           ++   I  VW+L  A+  P + GW
Sbjct: 152 RVLATIAGVWILSGAISSPPLAGW 175


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 119 KIYTNIMRVWVLIVALLLPNVGGW 190
           ++   I  VW+L  A+  P + GW
Sbjct: 152 RVLATIAGVWILSGAISSPPLAGW 175


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 245 YDTINKPSWTPPNWVFGPAWTVFYTMIGFSSYLVYRDGG 361
           Y T     WT   ++   AW +FY ++     L +R  G
Sbjct: 102 YATCVLSCWTNIYYIIILAWALFYLLVSLRIDLPWRTCG 140


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 245 YDTINKPSWTPPNWVFGPAWTVFYTMIGFSSYLVYRDGG 361
           Y T     WT   ++   AW +FY ++     L +R  G
Sbjct: 155 YATCVLSCWTNIYYIIILAWALFYLLVSLRIDLPWRTCG 193


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 119 KIYTNIMRVWVLIVALLLPNVGGW 190
           ++   I  VW+L  A+  P + GW
Sbjct: 152 RVLATIAGVWILSGAISSPPLAGW 175


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 284 WVFGPAWTVFYTMIG 328
           WV GP +   Y M+G
Sbjct: 118 WVLGPLFCQIYAMLG 132


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 322 HGVENCPSGTEDP 284
           H V+ CP GT++P
Sbjct: 86  HTVKYCPKGTKNP 98


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 284 WVFGPAWTVFYTMIG 328
           WV GP +   Y M+G
Sbjct: 84  WVLGPLFCQIYAMLG 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,514
Number of Sequences: 438
Number of extensions: 4216
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)