Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13n02
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    29   0.78 
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    28   1.4  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    27   1.8  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    27   1.8  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   3.1  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   4.2  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    26   5.5  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    26   5.5  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   9.6  

>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +1

Query: 394 DPSKELQAALKYIHLEELKGK--RISFLCGDAGPLALATVISYRLGNKRPDNLPDYKSLA 567
           D S+++Q +L  +  + L  +  R   L G     AL       L  +RP+N+ DY  +A
Sbjct: 325 DSSRDVQLSLNNVQSQALNNRQRRNQLLPGVPSTSAL-------LDGRRPENVVDYHGIA 377

Query: 568 QRLMNLISLLNEAP--DELLYG 627
               N    +N+ P  +++L+G
Sbjct: 378 SFFDNFDKKINKLPREEDILFG 399


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 308 NLIYFMTTQCIQVLLVWPYIIIQAL 382
           NLI F+T +C ++++V P+ ++Q L
Sbjct: 85  NLIEFLTARCPRLVVVLPWTVLQEL 109


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 271 KAVKLQTLLSKIESDIFYDHTVYTGSAGMALYYYTSSLKMNDPSKELQAALKYIHLEEL 447
           +++ L  LLS  E D FY   +      +  Y+ T S    D S+ + + L Y  L+ L
Sbjct: 247 RSIVLDALLSADEEDSFYGDALVLFEELVIRYFGTDSNPSIDASEFILSCLPYTSLDAL 305


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 394 DPSKELQAALKYIHLEELKGKRIS 465
           DPS  L+ ALK+I + +LK  RIS
Sbjct: 294 DPSYRLERALKHIEVLKLKNYRIS 317


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 443  SSKCMYFKAACNSLLGSFIFKELV**YKAIPAEPVYTV 330
            SS  + F  +CNSL       E V  Y  +P EP  T+
Sbjct: 1161 SSSVLLFVRSCNSLQAEMNSYERVLEYSKLPQEPAPTI 1198


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
 Frame = +1

Query: 37  FVPNYSYRSTDCIAFY**FGLRNYYPKIIKLK*STPEMAPRGAFDNQ-YDDYSPDSA--- 204
           F+ N  Y       F     L  +YP+ ++ K  +        F N     +S ++A   
Sbjct: 340 FLKNCGYYELAWSIFQANMELCYFYPRYLEKKLDSTFFESFSKFWNSDTPKFSEENARGW 399

Query: 205 ANVLDESGEQISQKFKLKLEKFKAVKL 285
            NVLD+   Q +Q F  ++  F+ VKL
Sbjct: 400 CNVLDDESSQQNQNFSSEIGIFQTVKL 426


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 532 SCYLADTR*QLQELMDLRLHRENLF 458
           SCYLA T   L  + +  +H  NLF
Sbjct: 308 SCYLASTMQSLFSIKEFAIHELNLF 332


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 466 FLCGDAGPLALATVISYRLGNKRPD 540
           F+ G AGPL  +T  + RL ++ PD
Sbjct: 126 FMVGSAGPLFSSTARTSRLDSRLPD 150


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/20 (40%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
 Frame = +1

Query: 7   KKINFFY-IIHFVPNYSYRS 63
           ++IN++  ++H++PNYS R+
Sbjct: 57  RRINYYIPVLHWLPNYSLRN 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,186
Number of Sequences: 5004
Number of extensions: 50670
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)