Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13n02
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   0.84 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.8  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 421 KQPAILY-WGHSFSKSLYNNIRPYQQNLYTLCGHKIYQILFLI 296
           K+P I+    +++  S YNN   Y  N Y     K+Y   ++I
Sbjct: 310 KEPKIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYII 352


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 352 GMALYYYTSSLKMNDPSKELQAALKYIHLEEL 447
           GMAL   T +L  N PS E    L Y++ E L
Sbjct: 254 GMALSPVTHNLYYNSPSSE---NLYYVNTESL 282


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -2

Query: 112 DNNYGDRTINRRQYNRYSDM 53
           +NNY +   N   YN Y  +
Sbjct: 98  NNNYNNYNYNNNNYNNYKKL 117


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -2

Query: 409 ILYWGHSFSKSLYNNIRPYQQNLYTLCGHKI 317
           +L  GH      Y NI+    N   L GH I
Sbjct: 118 MLELGHEVCGRFYGNIQTVXNNWLLLEGHSI 148


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 385 KMNDPSKELQAALKYIHL 438
           KM  P K+ QA + Y H+
Sbjct: 50  KMRPPKKDGQATVVYFHV 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,241
Number of Sequences: 438
Number of extensions: 3709
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)