Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13m14
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     28   0.083
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    27   0.19 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 0.083
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 552 VCSSISCDVIQEASHAVYQIRGHSKTAANGASSPV*YHSAITV 424
           +C  +   V+Q+ SH +Y++        NG   P+ YH   TV
Sbjct: 134 LCKELGISVVQKVSHTLYKL--DEIIERNGDKPPLTYHQFQTV 174


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 178 NRICQLLMTSARHWRYHQHSTSP 110
           N IC +L  S  HW+   +ST+P
Sbjct: 290 NLICHILCMSDLHWQLPHNSTNP 312


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 509 CDASWMTSQLMLEQTSPVYSTDLLS 583
           CD  W+    ++  T P+ S  LL+
Sbjct: 132 CDRLWVLDSGLVNNTQPMCSPKLLT 156


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 509 CDASWMTSQLMLEQTSPVYSTDLLS 583
           CD  W+    ++  T P+ S  LL+
Sbjct: 132 CDRLWVLDSGLVNNTQPMCSPKLLT 156


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 509 CDASWMTSQLMLEQTSPVYSTDLLS 583
           CD  W+    ++  T P+ S  LL+
Sbjct: 132 CDRLWVLDSGLVNNTQPMCSPKLLT 156


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 69  CSVLCYFSVLCAYAGEVECWWYRQC 143
           CS+ C   ++    G+  CW   QC
Sbjct: 449 CSLPCEPGMIKKQQGDTCCWVCDQC 473


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
 Frame = +1

Query: 127 GGIASAEQKSSTIDRFYCEDIV-----GCWT*GDIHKPTYGDE 240
           GG+ + E    T+D+   +DIV     G     D    TYG E
Sbjct: 141 GGVQALEAMLYTLDKLNTQDIVPGVRIGAHILDDCDNDTYGLE 183


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 69  CSVLCYFSVLCAYAGEVECWWYRQC 143
           CS+ C   ++    G+  CW   QC
Sbjct: 539 CSLPCEPGMIKKQQGDTCCWVCDQC 563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,035
Number of Sequences: 438
Number of extensions: 3582
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)