Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13m12
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    38   0.001
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    36   0.004
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    36   0.005
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    32   0.049
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    31   0.11 
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    31   0.11 
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    29   0.60 
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    27   2.4  
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    26   3.2  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    26   3.2  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    26   4.2  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    25   5.6  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    25   7.4  
SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid Pmp31|Schi...    25   7.4  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   9.8  

>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 18/81 (22%), Positives = 41/81 (50%)
 Frame = +3

Query: 303 LTDGEVSWMGAAAYLTCVPADYFMAFLGDRVGRKPALLFVSSVAVLCWVLKLSSMETWAL 482
           LT+G   ++ +A  L  +        L D  GRKP +   S + ++  ++++++   W +
Sbjct: 124 LTNGGKEFITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHM 183

Query: 483 VLARALVGITMAGSYVTCPLY 545
           ++ R ++G  +  + +  PLY
Sbjct: 184 IVGRFVIGWGVGIASLIIPLY 204


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 23/69 (33%), Positives = 29/69 (42%)
 Frame = +3

Query: 315 EVSWMGAAAYLTCVPADYFMAFLGDRVGRKPALLFVSSVAVLCWVLKLSSMETWALVLAR 494
           +VSW   A  ++C           D  GRK  LL    V  +   L  +S   W LV AR
Sbjct: 125 QVSWTATAYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIGCFLCGTSRSLWQLVAAR 184

Query: 495 ALVGITMAG 521
           A+ GI   G
Sbjct: 185 AIAGIGGGG 193


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 27/126 (21%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
 Frame = +3

Query: 189 ILCAVLINLPVFAYGASIGWMSPMTLL--LQSPNSPRDPPLTDGEVSWMGAAAYLTCVP- 359
           I+  V +++  + +GA  G +  +T +   QS  + R  P+TD           +T +  
Sbjct: 7   IVMLVFVSMAGWMFGADTGSIGGITNMRDFQSRFADRYNPVTDSYSYSSARQGLITGMVN 66

Query: 360 -ADYFMAFLG----DRVGRKPALLFVSSVAVLCWVLKLSSMETWA-LVLARALVGITMAG 521
              +F  FL     DR+G++ +++F + V ++  +L+++++ +W  +++A+   G+++  
Sbjct: 67  VGSFFGCFLSSPLMDRIGKRTSIMFWTIVYLIGIILQVTAVPSWVQIMVAKIWTGLSIGA 126

Query: 522 SYVTCP 539
             V  P
Sbjct: 127 LSVLAP 132


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 32.3 bits (70), Expect = 0.049
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +3

Query: 303 LTDGEVSWMGAAAYLTCVPADYFMAFLGDRVGRKPALLFVSSVAVLCWVLKLSSMETWAL 482
           L+ G+   + +A     + +     +L D VGRK  LL   ++ V+  V+  +S     +
Sbjct: 117 LSSGQKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMM 176

Query: 483 VLARALVGITMAGSYVTCPLY 545
           V+ R +VG  +  + +  P+Y
Sbjct: 177 VVGRFIVGYGIGLTSLIVPMY 197


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 28/130 (21%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
 Frame = +3

Query: 189 ILCAVLINLPVFAYGASIGWMSPMTLL--LQSPNSPRDPPLTD---------GEVSWMGA 335
           I+  V +++  + +GA  G +  +T +   QS  + R  P+TD         G ++ M  
Sbjct: 7   IVMLVFVSMAGWMFGADTGSIGGITNMRDFQSRFADRYNPVTDTYSYSSARQGLITGMVN 66

Query: 336 AAYLT-CVPADYFMAFLGDRVGRKPALLFVSSVAVLCWVLKLSSMETWA-LVLARALVGI 509
              +T C+ +   M    DR+G++ +++F + V ++  +L+++++ +W  +++A+   G+
Sbjct: 67  VGSMTGCILSSPLM----DRIGKRVSIMFWTIVYLIGIILQVTAVPSWVQIMVAKIWTGL 122

Query: 510 TMAGSYVTCP 539
            +    V  P
Sbjct: 123 AIGALSVLAP 132


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 31/134 (23%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
 Frame = +3

Query: 174 SKINQILCAVLINLPVFAYGASIGWMSPMTLL--LQSPNSPRDPPLTDGEVSWMGAAAYL 347
           +KI  I+  V +++  + +GA  G +  +T +   QS  + R  P+TD   S+  A   L
Sbjct: 2   AKILTIVMLVFVSMAGWMFGADTGSIGGITNMRDFQSRYADRYDPVTD-TYSYSSARQGL 60

Query: 348 ------TCVPADYFMAF-LGDRVGRKPALLFVSSVAVLCWVLKLSSMETWA-LVLARALV 503
                 T       ++  LGDR G++  ++  + V +   +++L+++ +W  +++A+   
Sbjct: 61  LVGMVNTGTTVGCLLSSPLGDRFGKRKCIMGWTLVYITGVIVQLTTIPSWVQMMVAKIWT 120

Query: 504 GITMAGSYVTCPLY 545
           G+ +    V  P Y
Sbjct: 121 GLGIGALSVIAPGY 134


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
 Frame = +3

Query: 171 GSKINQILCAVLINLPVFAYGASIGWMSPMTLL--LQSPNSPRDPPLTDGEV--SWMGAA 338
           G  +  +L  V I++  +  GA  G +S +  +   QS  + R  P+T+     +W  A 
Sbjct: 2   GRTLTSVL-VVFISMAGWLGGADTGSISGILGMRDFQSRFADRYNPITNSYSYSAWRQAL 60

Query: 339 AYLTCVPADYFMAFLG----DRVGRKPALLFVSSVAVLCWVLKLSSMETWA-LVLARALV 503
              T      F A L     + +G+K ++ F S   ++  +L ++++ +W  +++ +   
Sbjct: 61  LTGTVNAGCLFGAMLSSPFTEAIGKKYSIAFFSGCYIIGQILLVTAVPSWVQIMVGKLFT 120

Query: 504 GITMAGSYVTCPLY 545
           G+T+    V  P Y
Sbjct: 121 GLTIGALSVLSPGY 134


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +3

Query: 339 AYLTCVPADYFMAFLGDRVGRKPALLFVSSVAVLCWVLKLSSMETWALVLARALVGI 509
           AYL  +P +YF +FLG    +   L    S      +LK      W   L    +G+
Sbjct: 2   AYLIDIPFEYFSSFLGVHPDQLKLLFCFLSAYPFAGILKRLPSAPWIRNLFSISIGL 58


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -2

Query: 148 DFMMSEKECVESNVAVLTAVRAS 80
           DF ++ ++C++ NV + TAVR++
Sbjct: 35  DFGVNVQQCIKGNVPIKTAVRSA 57


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +3

Query: 321 SWMGAAAYLTCVPADYFMAFLGDRVGRKPALLFVSSVAVLCWVLKLSSMET--WALVLAR 494
           SW+G A  L       F   + + VGRK  +L+ S V  L       + +   W LVL R
Sbjct: 128 SWIGTAYTLAQTSILPFCGIMSEVVGRK-IVLYTSIVLFLFGSAMCGAAQNMLW-LVLCR 185

Query: 495 ALVGITMAG 521
           A+ GI   G
Sbjct: 186 AVQGIGGGG 194


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 24/133 (18%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
 Frame = +3

Query: 174 SKINQILCAVLINLPVFAYGASIGWMSPMTLL--LQSPNSPRDPPLTDGEVSWMGAAAYL 347
           SK   I   + +++  + +GA  G +  +T +   QS  + R  P+TD           +
Sbjct: 2   SKTLTITMLLFVSMAGWMFGADTGSIGGITNMRDFQSRFADRYNPVTDTYSYSSARQGLI 61

Query: 348 TCVP--ADYFMAFLG----DRVGRKPALLFVSSVAVLCWVLKLSSMETWA-LVLARALVG 506
           T +     +F   +     DR+G++ +++    + ++  +++++++ +W  +++A+   G
Sbjct: 62  TGMVNVGSFFGCLISSPTTDRIGKRNSIIGFCVIYLIGVIIQVTAVPSWVQIMVAKIWTG 121

Query: 507 ITMAGSYVTCPLY 545
           + +    V  P Y
Sbjct: 122 LGIGALSVLAPGY 134


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 231 GASIGWMSPMTLLLQSPNSPRDPPLTDGEVSW 326
           G ++ W     +LL SPN P D PL  G  SW
Sbjct: 169 GQALRWSYGYRILL-SPNQPED-PLPIGNRSW 198


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -2

Query: 283 FGDCSSRVMGDIQPMLAPYANTGRFMSTAHRIWLILLPSRKKK**DFMMSEKECVE 116
           +G+  + V  DI+P++ P     +   T  ++W   LPS K +   + +  K+ VE
Sbjct: 76  YGNIKASV-NDIEPIVLPDEELCQLRLTNMKLWNCKLPSLKDEAEFYSLFSKKIVE 130


>SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid
           Pmp31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 180 INQILCAVLINLPVFAYGASIGWMSPMTLLLQSPNSPRDP 299
           IN  LCA  + +P   +   I    P T+ L   NSP DP
Sbjct: 36  INICLCA--LGIPGIIHAIYIVIKYPRTVRLDIENSPNDP 73


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 408 PASCRPCLRGRP*SSLPAH 352
           P SC+P LR  P   +P+H
Sbjct: 146 PVSCQPVLRPPPVPQVPSH 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,271
Number of Sequences: 5004
Number of extensions: 36759
Number of successful extensions: 116
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)