Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13m06
         (171 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0547 + 11399769-11399852,11399906-11400088,11400474-114005...    25   8.7  

>02_02_0547 +
           11399769-11399852,11399906-11400088,11400474-11400578,
           11400690-11400773,11400938-11401053,11401158-11401259,
           11401339-11401452,11401540-11401596,11401681-11401873,
           11402261-11402335,11402425-11402460,11402509-11402574,
           11402575-11402688
          Length = 442

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 170 LHQXXFSIVNNLNNEIGKN*PRSLFIKHKKCTPLKF 63
           +HQ   S+ N  N E GK     +F  H+ CT  KF
Sbjct: 361 VHQAVPSLGNQGNAENGKAPWEGIFPTHELCTAHKF 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,370
Number of Sequences: 37544
Number of extensions: 31524
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)