Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13m06
         (171 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   1.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   4.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       19   5.5  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    19   7.3  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    19   7.3  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    19   7.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    18   9.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -1

Query: 111 TQKFIHKT*KVYAFKISLIEKGIYNKH 31
           ++K+  +T     F ++ + KG+  KH
Sbjct: 45  SKKYFEQTLNELNFNLNYVNKGVTYKH 71


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 149 IVNNLNNEIGKN*PRS 102
           I+N+ N+E GK  P S
Sbjct: 571 IINSSNDEGGKTSPNS 586


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 44  IPFSINEILKAYTFY 88
           + FS+N ILK    Y
Sbjct: 294 VKFSLNSILKTVVAY 308


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 131 NEIGKN*PRSLFIKHKKCTPLKFH*SKKV 45
           NE+ +  P +L    KKCT  +    KKV
Sbjct: 62  NELKRVLPDALATDCKKCTDKQREVIKKV 90


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 131 NEIGKN*PRSLFIKHKKCTPLKFH*SKKV 45
           NE+ +  P +L    KKCT  +    KKV
Sbjct: 62  NELKRVLPDALATDCKKCTDKQREVIKKV 90


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 131 NEIGKN*PRSLFIKHKKCTPLKFH*SKKV 45
           NE+ +  P +L    KKCT  +    KKV
Sbjct: 62  NELKRVLPDALATDCKKCTDKQREVIKKV 90


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 104 SLFIKHKKCTPLK 66
           +L I HK  TP+K
Sbjct: 245 TLDIDHKMLTPIK 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,331
Number of Sequences: 438
Number of extensions: 600
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 36
effective length of database: 130,575
effective search space used:  2611500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)