Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13m05
         (126 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    24   2.4  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    23   7.4  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    22   9.7  

>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 59  SDYCFMHHASSSFXCPSTC 115
           +DYC   H   +F C  TC
Sbjct: 263 NDYCSACHGPGNFLCCETC 281


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 56  ESDYCFMHHASSSF 97
           ESD C+  +ASSSF
Sbjct: 128 ESDSCYFGNASSSF 141


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 41  NKNGLESDYCFMHHASSS 94
           N+NGL  +  F+HH   S
Sbjct: 562 NQNGLRMESSFIHHEHPS 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 378,075
Number of Sequences: 5004
Number of extensions: 3068
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 2,362,478
effective HSP length: 22
effective length of database: 2,252,390
effective search space used: 42795410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)