Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13m02
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    48   2e-06
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    26   5.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.0  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   9.3  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    25   9.3  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   9.3  

>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 41/194 (21%), Positives = 84/194 (43%), Gaps = 6/194 (3%)
 Frame = +2

Query: 11  SDSTNSDSETEQHLYKRVKLPVPDLSRVRIVLTEETHIDDHQKHKGRKRSFPHVRGNWAT 190
           S S   D ET     + +K+P    S   +   +    D  + H+GR R   H+ G W  
Sbjct: 9   SSSGEDDDETISDNPRMLKVPKLQESFHELYKKKPKTFDSPEFHEGRIRGQKHIEGLWFV 68

Query: 191 FVYVQYPNDDFVNKLSRKVLDALTESSH---TWHKC-ENLHITLSKTVVLNYHWIAPFHN 358
             Y++      V K  R+ L++ +       + H     LH+++S+   +NY       +
Sbjct: 69  QTYLEVDLSKKVKKGIREFLNSQSRFQSLLCSEHNVPRRLHLSISENYRINYSTKNQLVH 128

Query: 359 SLKKTLTNIKCFELEF--DELQVLCNEDKSRTFVVLKTNRFSHKHFFAITKKVDEILSEF 532
             ++   N+    L+F   ++ +L N++K+R F+  +  +FS +++  +     + + EF
Sbjct: 129 KWEQYTNNLNYRTLKFRLGKMCLLFNDEKTRMFLAFEC-KFSDENYKDLISHASDCMKEF 187

Query: 533 KLPKFYDEPSFHMS 574
                 ++   H+S
Sbjct: 188 TNRNLREDFLLHIS 201


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
            Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/59 (27%), Positives = 22/59 (37%)
 Frame = +2

Query: 464  TNRFSHKHFFAITKKVDEILSEFKLPKFYDEPSFHMSILWTNGDKETETNGALDKLNQI 640
            TN  +  H   +T         F LP    EP      LW  G  E   N A+ +L ++
Sbjct: 932  TNNTNIVHVTELTGTSITTKGNFYLPGKNPEPGEEKLYLWIEGPSELVVNRAITELRRL 990


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +2

Query: 341  IAPFHNSLKKTLTNIKCFELEFDELQVLCNEDKSRTFVVLKTNRFSHKHFFAITKKVDEI 520
            I      L KTL +     +  DE+ VL    K +     +T R ++    +I +KVDE+
Sbjct: 3656 IRSLQEQLLKTLCSSNENIVGTDEIVVLLKNLKEKH----ETIRLAYSESQSINRKVDEL 3711

Query: 521  LSEFKL 538
            +  +KL
Sbjct: 3712 IRRYKL 3717


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 317 TVVLNYHWIAPFHNSLKKTLTNIKCFELEFDELQ 418
           T +++ HW+A FH S  + L       ++ D+L+
Sbjct: 890 TQIIDPHWLAMFHESEIQILVGGDPVPIDIDDLR 923


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 206 YPNDDFVNKLSRKVLDALTESSHTWH 283
           YPN ++   ++ K+L A   + H WH
Sbjct: 123 YPNWNYEMMITEKLLSADARNFHGWH 148


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
 Frame = +2

Query: 248 LDALTESSHTWHKCENLHITLSKTVVLNYHWI----APFHNSLKKTLTNIKCFELEFDEL 415
           +D L +S  T  K  ++H T  +   LNY  I     PFHN     +  I    LEFDE 
Sbjct: 291 MDILLDSYLT--KAMDIHATFIQK--LNYDLINLLYEPFHNIYSSFIKPIDDRRLEFDEQ 346

Query: 416 QVLCNEDKSRTFVVLKTNRFSHKHFF 493
                   SR     K  +     FF
Sbjct: 347 SKSFYGSLSRYLSAKKDKKGGDSKFF 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,041
Number of Sequences: 5004
Number of extensions: 46875
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)