Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13m02
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0145 - 26262286-26262480,26262811-26262876,26263029-262631... 42 4e-04
04_03_0826 + 20103105-20103697,20104222-20104391,20104487-201047... 29 2.4
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824... 29 3.1
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597... 28 5.5
01_01_0931 - 7351306-7351371,7351620-7351772,7352343-7352484,735... 28 5.5
02_04_0052 + 19271014-19271627,19272055-19272224,19272321-192725... 27 9.6
>02_05_0145 -
26262286-26262480,26262811-26262876,26263029-26263125,
26263283-26263341,26263372-26263532,26264039-26264087,
26264142-26264205,26264294-26264469
Length = 288
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/101 (21%), Positives = 47/101 (46%)
Frame = +2
Query: 335 HWIAPFHNSLKKTLTNIKCFELEFDELQVLCNEDKSRTFVVLKTNRFSHKHFFAITKKVD 514
H I L++ + + + ++F++ + N+D +R+F+ L+ VD
Sbjct: 152 HQIESLVAMLRQKFRSQQRYWMDFNKWEHFVNDDCTRSFLSLEVTSTGLPEISKQITMVD 211
Query: 515 EILSEFKLPKFYDEPSFHMSILWTNGDKETETNGALDKLNQ 637
++ LP+FY P H+S+ W GD + A+ ++ +
Sbjct: 212 DVYRLHGLPEFYKNPRPHISLAWALGDVSCKLKQAIKEIEK 252
>04_03_0826 +
20103105-20103697,20104222-20104391,20104487-20104716,
20104825-20104933,20104967-20105154,20105818-20105919,
20106114-20106395,20106504-20106625,20106708-20107020,
20107096-20107329,20107477-20107767,20107975-20108286
Length = 981
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/93 (23%), Positives = 42/93 (45%)
Frame = +2
Query: 77 PDLSRVRIVLTEETHIDDHQKHKGRKRSFPHVRGNWATFVYVQYPNDDFVNKLSRKVLDA 256
P L+R + T +D+H+ H + ++ + + + +D V K+L
Sbjct: 422 PALARGELQCIASTTLDEHRLHFDKDKALAR---RFQPVLVNEPSQEDAV-----KILLG 473
Query: 257 LTESSHTWHKCENLHITLSKTVVLNYHWIAPFH 355
L E T+HKC+ +++ V L+ +IA H
Sbjct: 474 LREKYETYHKCKYTLESINAAVYLSARYIADRH 506
>11_04_0441 +
17781533-17781775,17782007-17782114,17782386-17782471,
17782546-17782807,17782921-17783120,17783770-17784012,
17784118-17784394,17784625-17784759,17784880-17784960,
17785311-17785406,17785661-17785756,17785834-17785890,
17785967-17786035,17786154-17786240,17786534-17786635,
17786730-17786819,17786900-17786980,17787573-17787653,
17787761-17787856,17787937-17787993,17788093-17788137,
17788218-17788346
Length = 906
Score = 29.1 bits (62), Expect = 3.1
Identities = 27/145 (18%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Frame = +2
Query: 200 VQYPNDDFVNKLSRKVLDALTESSHTWHKCENLHITLSKTVVLNYHWIAPFHNSLKKTLT 379
+QY + + ++++ V + L + + I T +L+ + N ++K L
Sbjct: 235 LQYVHSLWTDEVASNVSEKLEGAKFIIQAEKPFGIIEETTEMLDMNEEELLENEIRKWLK 294
Query: 380 NIKCFELEFDELQVLCNEDKSRTFVVLKTNRFSHKHFFAITKKVDEILSEFKLPK----F 547
I+ + E ++ ++ +F K H F +T+++ +L+ LP+
Sbjct: 295 KIRQTGFLYKETMLVPDKFCHISFTEEKIEELGKDHLFEVTREISYMLAVMALPELNGGI 354
Query: 548 YDEPSFHMSILWTNGDKETETNGAL 622
+E +SI+ T+ D E+ + +L
Sbjct: 355 ANEHQSIVSIVETSADLESTCSSSL 379
>08_01_0682 +
5974622-5974745,5976182-5976371,5976953-5977024,
5977482-5977553,5977688-5977759,5977842-5977913,
5978690-5978761,5978855-5978926,5979017-5979091,
5979529-5979594,5979821-5979885,5979975-5980354,
5980438-5980636,5980713-5980763,5980955-5981073,
5981190-5981400,5981524-5981755,5981842-5981992,
5982089-5982447,5982750-5982768
Length = 890
Score = 28.3 bits (60), Expect = 5.5
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = +2
Query: 311 SKTVVLNYHWIAPFHNSLKKTLTNIKCFELEFD-ELQVLCNEDKSRTFVVLKTN-RFSHK 484
S T +L Y ++ + SL + L K F L++ +++ + T++ +++ R H+
Sbjct: 617 SNTPLLVYEYLE--NGSLDRALFGSKSFNLDWPTRFEIVLGVARGLTYLHEESSVRIVHR 674
Query: 485 HFFAITKKVDEIL----SEFKLPKFYDEPSFHMS 574
A +D L S+F L K YDE H+S
Sbjct: 675 DIKASNVLLDTDLTPKISDFGLAKLYDEKKTHIS 708
>01_01_0931 -
7351306-7351371,7351620-7351772,7352343-7352484,
7352604-7352791,7353117-7353179,7353541-7353585,
7353658-7353792,7354515-7354623,7355032-7355084,
7355168-7355317,7355714-7355722,7356161-7356577
Length = 509
Score = 28.3 bits (60), Expect = 5.5
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Frame = +2
Query: 269 SHTWH---KCENLHITLSKTVVLNYHWIAPFHN--------SLKKTLTNIK-CFELEFDE 412
+H WH K N I L + +L+Y + F + K T ++K CF LEFD
Sbjct: 379 AHRWHNYMKTPN-EIKLEEAAILHYTY-TKFSDLTSRRDRCGCKPTKEDVKRCFILEFDR 436
Query: 413 LQVLCNEDKSRTFVVLKTNRFSHKHF 490
L ++ +S F T+ +H F
Sbjct: 437 LAIIRGLKESGVFTTAVTSAKAHAKF 462
>02_04_0052 +
19271014-19271627,19272055-19272224,19272321-19272550,
19272657-19272765,19272858-19272985,19273102-19273203,
19273285-19273566,19273660-19273769,19273851-19274145,
19274242-19274475,19274705-19274935,19275167-19275478
Length = 938
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/89 (23%), Positives = 39/89 (43%)
Frame = +2
Query: 77 PDLSRVRIVLTEETHIDDHQKHKGRKRSFPHVRGNWATFVYVQYPNDDFVNKLSRKVLDA 256
P L+R + T +D+H+ H + ++ + + + DD V K+L
Sbjct: 409 PPLARGELQCIAATTLDEHRMHFEKDKALAR---RFQPVLVEEPSQDDAV-----KILLG 460
Query: 257 LTESSHTWHKCENLHITLSKTVVLNYHWI 343
L E T+HKC+ ++ V L+ +I
Sbjct: 461 LREKYETYHKCKFTLEAINAAVYLSARYI 489
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,653,208
Number of Sequences: 37544
Number of extensions: 244276
Number of successful extensions: 551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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