Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13m02
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ812088-1|ABG89384.1|  530|Caenorhabditis elegans mammalian str...    35   0.057
AC024823-3|AAP40515.1|  395|Caenorhabditis elegans Hypothetical ...    35   0.057
AC024823-2|AAF59596.3|  530|Caenorhabditis elegans Hypothetical ...    35   0.057
AC024823-1|AAL32257.1|  510|Caenorhabditis elegans Hypothetical ...    35   0.057
AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical...    31   0.53 
AC006720-7|AAF60444.1|  511|Caenorhabditis elegans Cytochrome p4...    28   4.9  
U64836-9|AAG24062.2|   93|Caenorhabditis elegans Hypothetical pr...    28   6.5  
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p...    28   6.5  

>DQ812088-1|ABG89384.1|  530|Caenorhabditis elegans mammalian
           stromal interaction molecule-1 protein.
          Length = 530

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 356 NSLKKTLTNIKCFELEFDELQVLCNEDKSR 445
           N L   LT +KC E EF+++Q + N+++S+
Sbjct: 221 NELSNKLTELKCMETEFEDVQKMLNDERSK 250


>AC024823-3|AAP40515.1|  395|Caenorhabditis elegans Hypothetical
           protein Y55B1BM.1c protein.
          Length = 395

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 356 NSLKKTLTNIKCFELEFDELQVLCNEDKSR 445
           N L   LT +KC E EF+++Q + N+++S+
Sbjct: 221 NELSNKLTELKCMETEFEDVQKMLNDERSK 250


>AC024823-2|AAF59596.3|  530|Caenorhabditis elegans Hypothetical
           protein Y55B1BM.1a protein.
          Length = 530

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 356 NSLKKTLTNIKCFELEFDELQVLCNEDKSR 445
           N L   LT +KC E EF+++Q + N+++S+
Sbjct: 221 NELSNKLTELKCMETEFEDVQKMLNDERSK 250


>AC024823-1|AAL32257.1|  510|Caenorhabditis elegans Hypothetical
           protein Y55B1BM.1b protein.
          Length = 510

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 356 NSLKKTLTNIKCFELEFDELQVLCNEDKSR 445
           N L   LT +KC E EF+++Q + N+++S+
Sbjct: 221 NELSNKLTELKCMETEFEDVQKMLNDERSK 250


>AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.5 protein.
          Length = 121

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
 Frame = +2

Query: 224 VNKLSRKVLDALTE-SSHTWHKCENLHITLSKTVVLNYHWIAPFHNSLKKTLTNIKCFEL 400
           + +   K  DAL    S  W+K E  H ++ K ++    W AP+     +     +CF  
Sbjct: 15  LQQYKEKFSDALRHPDSPDWYKKET-HESVKKDLL----WAAPYDARFPQVRKQRQCFAY 69

Query: 401 EFDELQVLCNEDKSRTFVVLKTNRFSHKHFFA--ITKKVDEILSEFKLPKFYD 553
             D  +  CNE   + +   K  +  +K F     T++ DE+LSE + P  +D
Sbjct: 70  YVDFHR--CNELMGQDYKPCKFFQNVYKDFCPGFWTERWDELLSEGRFPAKFD 120


>AC006720-7|AAF60444.1|  511|Caenorhabditis elegans Cytochrome p450
           family protein 31A3 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 182 WATFVYVQYPNDDFVNKLSRKVLDALTESSHTWHKCENLHITLSKTVVL 328
           W +F+Y  Y  D F+ K    +L   TE   T  KC  +    +K V++
Sbjct: 222 WNSFIYNLY--DSFIIKKVNSILFFRTEDGRTHEKCLRILHDFTKKVIV 268


>U64836-9|AAG24062.2|   93|Caenorhabditis elegans Hypothetical
           protein F10G2.9 protein.
          Length = 93

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 221 FVNKLSRKVLDALTESSHTWHKCENLHITLSKTVVLNYH 337
           + NKLS +  D L  + H   KC+NLH T + T+  +YH
Sbjct: 44  YFNKLSTQ--DQLILTRHVLLKCKNLH-TSNYTMYRDYH 79


>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
           protein R05D3.1 protein.
          Length = 1053

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 497 ITKKVDEILSEFKLPKFYDE 556
           I +K+D I +E+++P FY+E
Sbjct: 767 IRRKIDSISTEYEIPPFYEE 786


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,038,396
Number of Sequences: 27780
Number of extensions: 260116
Number of successful extensions: 736
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)