Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13l10
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          26   0.28 
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    24   1.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.0  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 323 CYCTAEECNTSLARKTVSR 267
           CYCT E+C  +  R+ V R
Sbjct: 2   CYCTCEKCKITANRQQVMR 20


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 431 CEECRASSPLPPGYGPQTLSPGY 499
           C+ECR    L  G  P+ + P Y
Sbjct: 36  CQECRLKKCLTVGMRPECMVPEY 58


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = +2

Query: 200 EERQAITKKMSLLTPVKIETPDSGRRSSEPTKYYIPPQCNNRLSPRSARRRDSKSNSKSG 379
           +E + +   +SLL      TP     SS   K        +R +   A +   K   KS 
Sbjct: 551 QELKRLKSTVSLLPLPLARTPSVMSASSTCKKDKKNAGSGSRFTIYKANKASKKKREKSS 610

Query: 380 AKEESPTKETM 412
           AK+E    +T+
Sbjct: 611 AKKERKATKTL 621


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 431 CEECRASSPLPPGYGPQTLSPGY 499
           C+ECR    L  G  P+ + P Y
Sbjct: 239 CQECRLKKCLTVGMRPECVVPEY 261


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 522  WTSLGMRITRRHRAMISVRNGIRMYQNQLLLQHTSNQNVGENYXTS 659
            W S+     R+  A+ +V  G+R Y N   +Q  +   VG+   T+
Sbjct: 1159 WRSVDEMEVRKTSALTTVLTGLRKYTN-YTIQVLAFTRVGDGVPTT 1203


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 522  WTSLGMRITRRHRAMISVRNGIRMYQNQLLLQHTSNQNVGENYXTS 659
            W S+     R+  A+ +V  G+R Y N   +Q  +   VG+   T+
Sbjct: 1155 WRSVDEMEVRKTSALTTVLTGLRKYTN-YTIQVLAFTRVGDGVPTT 1199


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 115 LDTLPSRAALLIT 77
           LD +P R ALL+T
Sbjct: 225 LDAIPGRVALLVT 237


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 87  NAARLGNVSSDLKCPSVRNSS 149
           N ARL N   +L C +V+ S+
Sbjct: 675 NDARLRNTMENLTCATVKGSA 695


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,599
Number of Sequences: 438
Number of extensions: 4624
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)