Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13k08
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 29 0.43
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 28 1.0
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 28 1.0
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 28 1.3
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 26 4.0
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 26 4.0
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom... 26 5.3
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 25 7.1
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 25 9.3
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 25 9.3
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 25 9.3
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 25 9.3
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 9.3
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 9.3
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 29.5 bits (63), Expect = 0.43
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 571 CPDNAFCRLNSYCVCKEGYV 630
CP NA C +Y CK GYV
Sbjct: 371 CPPNAICPSPNYVECKPGYV 390
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 363 GRIANSPAVFTDRRERPLPDAVSRASPEIYNRK*RNGRMAADFRGPPGPGDSTRPRETT 539
GR++NSP + E L +++ A + NR R R PPG D + T+
Sbjct: 192 GRLSNSPVKSPNMPESGLAKSLAAARNPLLNRPTSFNRQTRIRRAPPGKLDLSNSNPTS 250
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -2
Query: 206 RIDDLILF*IKTNKINLSIRQFNYYFCHLFAGSLRSYSGYALALIRAVF 60
R+ LIL+ N I L + QF Y FC+ F+G + + ++++L +F
Sbjct: 962 RLSKLILYSFYKN-IALYMTQFWYAFCNAFSGQV-IFESWSISLYNVLF 1008
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 571 CPDNAFCRLNSYCVCKEG 624
CP+NA C N CKEG
Sbjct: 531 CPENAECGFNRQLFCKEG 548
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -3
Query: 379 LLAIRPGASTPSLASLDKI*MLSRKKWRPSNNKNKHDNRSGYKKKS*RKHIQKSIKK 209
++ I P A S + + +K N +K N++G KK RKH+ KS K
Sbjct: 153 VIPINPNAEQLKTLSKRLLDLALSEKTHSLNKASKKSNKNGDKK---RKHVSKSNSK 206
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 26.2 bits (55), Expect = 4.0
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Frame = +3
Query: 366 RIANSPAVFTDRRER--PLPDAVSRASPEIYNRK*RNGRMAADFRGP---PGPGDSTRPR 530
R ++P T R R P P A + S + + RNG AA G G G S R
Sbjct: 148 RTTSTPTTTTARTTRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTGTGAGTGASHRSS 207
Query: 531 ETTDR 545
T+R
Sbjct: 208 PVTNR 212
>SPCC306.06c |||ER membrane protein, BIG1 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 479 HPPISSLPVINFGAGTAHRVWQRSLAPVSENGRT 378
H ++SLP N G+ T + Q PV++NG T
Sbjct: 226 HGQLASLPDQNEGSQTTLAMHQTRKHPVTDNGAT 259
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 451 ITGSDEMGGWQLIF-VALLGLATAQGPEKRRTGNVCNVDMD 570
IT + G +F + +GLA QG K+R G + +D++
Sbjct: 190 ITADIKEGDSVAVFGLGSVGLAVIQGAVKKRAGRIFGIDVN 230
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 581 LSGQSMSTLQTLPVRRFSGPCAVARPRRATKISCHPPISSL 459
LS S+ TLQT +R + PC+V + +S HP + L
Sbjct: 28 LSSNSVWTLQTGSIRESAQPCSVF----SISLSTHPEWAEL 64
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3
Query: 324 ILSRDASEGVLAPG 365
I+SR+ S+GV+APG
Sbjct: 324 IISREVSDGVIAPG 337
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 20 LSGSRFRCGGRFCETLLLLGL 82
L G F GGRFC +L L L
Sbjct: 74 LVGIAFEIGGRFCGLILTLAL 94
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 523 LVLSPGPGGPRKSAAI 476
LVLSPGPG P + I
Sbjct: 75 LVLSPGPGHPARDGGI 90
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 540 PSFLGALCCRQAQEGHENQLPSSHFVTSGYKFRGW 436
PSF L ++ + ++ PS+ TSG+ F G+
Sbjct: 542 PSFFSQLSPKREETEKKDNAPSAPASTSGFSFGGF 576
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 140 NYYFCHLFAGSLRSYSGYALALIRAVFRRIYHRIG 36
+YY C LF L + Y L + V+R + IG
Sbjct: 413 SYYICGLFLKKLMGNNDYRFRLKKQVYRLLELDIG 447
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,488
Number of Sequences: 5004
Number of extensions: 60691
Number of successful extensions: 154
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -