Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13k08
(645 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC080186-1|AAH80186.2| 279|Homo sapiens yrdC domain containing ... 32 1.5
BC067857-1|AAH67857.2| 278|Homo sapiens YRDC protein protein. 32 1.5
AY172561-1|AAO41711.1| 279|Homo sapiens YRDC protein protein. 32 1.5
AL929472-8|CAH70083.1| 279|Homo sapiens ischemia/reperfusion in... 32 1.5
BC128053-1|AAI28054.1| 409|Homo sapiens EMR3 protein protein. 31 2.7
BC121131-1|AAI21132.2| 377|Homo sapiens EMR3 protein protein. 31 2.7
BC121130-1|AAI21131.2| 409|Homo sapiens EMR3 protein protein. 31 2.7
BC008984-1|AAH08984.3| 292|Homo sapiens YRDC protein protein. 31 2.7
AY358817-1|AAQ89176.1| 600|Homo sapiens EMR3 protein. 31 2.7
AF239764-1|AAK15076.1| 652|Homo sapiens EGF-like module-contain... 31 2.7
S42457-1|AAB22778.1| 686|Homo sapiens rod photoreceptor cGMP-ga... 31 4.6
M57609-1|AAA52564.1| 1596|Homo sapiens DNA-binding protein protein. 30 6.1
BC117168-1|AAI17169.1| 1580|Homo sapiens GLI-Kruppel family memb... 30 6.1
BC113616-1|AAI13617.1| 1580|Homo sapiens GLI-Kruppel family memb... 30 6.1
AY358831-1|AAQ89190.1| 512|Homo sapiens MUC13 protein. 30 6.1
AJ250408-1|CAB59315.1| 1580|Homo sapiens GLI3 protein protein. 30 6.1
AF286113-1|AAK56861.1| 512|Homo sapiens transmembrane mucin MUC... 30 6.1
AC005026-1|AAP21869.1| 376|Homo sapiens unknown protein. 30 6.1
AB035807-1|BAB19651.1| 512|Homo sapiens down-regulated in colon... 30 6.1
>BC080186-1|AAH80186.2| 279|Homo sapiens yrdC domain containing (E.
coli) protein.
Length = 279
Score = 32.3 bits (70), Expect = 1.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 571 SPCRRCKRYRSVVSRGLVLSPGPGGPRKSAAILP 470
SP RRC+ R+ V+ + LS GP G R P
Sbjct: 2 SPARRCRGMRAAVAASVGLSEGPAGSRSGRLFRP 35
>BC067857-1|AAH67857.2| 278|Homo sapiens YRDC protein protein.
Length = 278
Score = 32.3 bits (70), Expect = 1.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 571 SPCRRCKRYRSVVSRGLVLSPGPGGPRKSAAILP 470
SP RRC+ R+ V+ + LS GP G R P
Sbjct: 1 SPARRCRGMRAAVAASVGLSEGPAGSRSGRLFRP 34
>AY172561-1|AAO41711.1| 279|Homo sapiens YRDC protein protein.
Length = 279
Score = 32.3 bits (70), Expect = 1.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 571 SPCRRCKRYRSVVSRGLVLSPGPGGPRKSAAILP 470
SP RRC+ R+ V+ + LS GP G R P
Sbjct: 2 SPARRCRGMRAAVAASVGLSEGPAGSRSGRLFRP 35
>AL929472-8|CAH70083.1| 279|Homo sapiens ischemia/reperfusion
inducible protein protein.
Length = 279
Score = 32.3 bits (70), Expect = 1.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 571 SPCRRCKRYRSVVSRGLVLSPGPGGPRKSAAILP 470
SP RRC+ R+ V+ + LS GP G R P
Sbjct: 2 SPARRCRGMRAAVAASVGLSEGPAGSRSGRLFRP 35
>BC128053-1|AAI28054.1| 409|Homo sapiens EMR3 protein protein.
Length = 409
Score = 31.5 bits (68), Expect = 2.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 484 LIFVALLGLATAQGPEKRRTGNVCNVDMDCPDNAFCRLNSYCVCKEGY 627
L+ L L + G ++T C CP NA C N++C C GY
Sbjct: 5 LLLPGLCFLLSLFGAVTQKTKTSC---AKCPPNASCVNNTHCTCNHGY 49
>BC121131-1|AAI21132.2| 377|Homo sapiens EMR3 protein protein.
Length = 377
Score = 31.5 bits (68), Expect = 2.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 484 LIFVALLGLATAQGPEKRRTGNVCNVDMDCPDNAFCRLNSYCVCKEGY 627
L+ L L + G ++T C CP NA C N++C C GY
Sbjct: 5 LLLPGLCFLLSLFGAVTQKTKTSC---AKCPPNASCVNNTHCTCNHGY 49
>BC121130-1|AAI21131.2| 409|Homo sapiens EMR3 protein protein.
Length = 409
Score = 31.5 bits (68), Expect = 2.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 484 LIFVALLGLATAQGPEKRRTGNVCNVDMDCPDNAFCRLNSYCVCKEGY 627
L+ L L + G ++T C CP NA C N++C C GY
Sbjct: 5 LLLPGLCFLLSLFGAVTQKTKTSC---AKCPPNASCVNNTHCTCNHGY 49
>BC008984-1|AAH08984.3| 292|Homo sapiens YRDC protein protein.
Length = 292
Score = 31.5 bits (68), Expect = 2.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 580 YPDSPCRRCKRYRSVVSRGLVLSPGPGGPRKSAAILP 470
+ +P RRC+ R+ V+ + LS GP G R P
Sbjct: 12 HASAPARRCRGMRAAVAASVGLSEGPAGSRSGRLFRP 48
>AY358817-1|AAQ89176.1| 600|Homo sapiens EMR3 protein.
Length = 600
Score = 31.5 bits (68), Expect = 2.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 484 LIFVALLGLATAQGPEKRRTGNVCNVDMDCPDNAFCRLNSYCVCKEGY 627
L+ L L + G ++T C CP NA C N++C C GY
Sbjct: 5 LLLPGLCFLLSLFGAVTQKTKTSC---AKCPPNASCVNNTHCTCNHGY 49
>AF239764-1|AAK15076.1| 652|Homo sapiens EGF-like module-containing
mucin-like receptor EMR3 protein.
Length = 652
Score = 31.5 bits (68), Expect = 2.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 484 LIFVALLGLATAQGPEKRRTGNVCNVDMDCPDNAFCRLNSYCVCKEGY 627
L+ L L + G ++T C CP NA C N++C C GY
Sbjct: 5 LLLPGLCFLLSLFGAVTQKTKTSC---AKCPPNASCVNNTHCTCNHGY 49
>S42457-1|AAB22778.1| 686|Homo sapiens rod photoreceptor cGMP-gated
channel protein.
Length = 686
Score = 30.7 bits (66), Expect = 4.6
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = -3
Query: 310 RKKWRPSNNKNKHDNRSGYKKKS*RKHIQKSIKKVESMTLSFFE*KQIKSIYR*GNSII- 134
+KK + S + NK++N++ +KK +K +K K+ +S E K++ I GN+
Sbjct: 104 KKKEKKSKSDNKNENKNDPEKKKKKKDKEKKKKEEKSKDKKEEEKKEVVVIDPSGNTYYN 163
Query: 133 -IFAIYSPVV 107
+F I PV+
Sbjct: 164 WLFCITLPVM 173
>M57609-1|AAA52564.1| 1596|Homo sapiens DNA-binding protein protein.
Length = 1596
Score = 30.3 bits (65), Expect = 6.1
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = -2
Query: 566 MSTLQTLPVRRFSGPCAVARPRRATKISCHPPISSLPVINFGAGTAHRVWQRSLAPVSEN 387
M L + RFS P ARP R +S IS L +F T R SL + N
Sbjct: 268 MEYLHAMDSTRFSSPRLSARPSRKRTLS----ISPLSDHSFDLQTMIRTSPNSLVTILNN 323
Query: 386 GRTIGNPAGS 357
R+ + +GS
Sbjct: 324 SRSSSSASGS 333
>BC117168-1|AAI17169.1| 1580|Homo sapiens GLI-Kruppel family member
GLI3 (Greig cephalopolysyndactyly syndrome) protein.
Length = 1580
Score = 30.3 bits (65), Expect = 6.1
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = -2
Query: 566 MSTLQTLPVRRFSGPCAVARPRRATKISCHPPISSLPVINFGAGTAHRVWQRSLAPVSEN 387
M L + RFS P ARP R +S IS L +F T R SL + N
Sbjct: 268 MEYLHAMDSTRFSSPRLSARPSRKRTLS----ISPLSDHSFDLQTMIRTSPNSLVTILNN 323
Query: 386 GRTIGNPAGS 357
R+ + +GS
Sbjct: 324 SRSSSSASGS 333
>BC113616-1|AAI13617.1| 1580|Homo sapiens GLI-Kruppel family member
GLI3 (Greig cephalopolysyndactyly syndrome) protein.
Length = 1580
Score = 30.3 bits (65), Expect = 6.1
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = -2
Query: 566 MSTLQTLPVRRFSGPCAVARPRRATKISCHPPISSLPVINFGAGTAHRVWQRSLAPVSEN 387
M L + RFS P ARP R +S IS L +F T R SL + N
Sbjct: 268 MEYLHAMDSTRFSSPRLSARPSRKRTLS----ISPLSDHSFDLQTMIRTSPNSLVTILNN 323
Query: 386 GRTIGNPAGS 357
R+ + +GS
Sbjct: 324 SRSSSSASGS 333
>AY358831-1|AAQ89190.1| 512|Homo sapiens MUC13 protein.
Length = 512
Score = 30.3 bits (65), Expect = 6.1
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 547 NVCNVDMDCPDNAFC-RLN--SYCVCKEGYVY 633
N C D C DN+ C +L+ S+C+C EGY Y
Sbjct: 175 NPCQDD-PCADNSLCVKLHNTSFCLCLEGYYY 205
>AJ250408-1|CAB59315.1| 1580|Homo sapiens GLI3 protein protein.
Length = 1580
Score = 30.3 bits (65), Expect = 6.1
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = -2
Query: 566 MSTLQTLPVRRFSGPCAVARPRRATKISCHPPISSLPVINFGAGTAHRVWQRSLAPVSEN 387
M L + RFS P ARP R +S IS L +F T R SL + N
Sbjct: 268 MEYLHAMDSTRFSSPRLSARPSRKRTLS----ISPLSDHSFDLQTMIRTSPNSLVTILNN 323
Query: 386 GRTIGNPAGS 357
R+ + +GS
Sbjct: 324 SRSSSSASGS 333
>AF286113-1|AAK56861.1| 512|Homo sapiens transmembrane mucin MUC13
protein.
Length = 512
Score = 30.3 bits (65), Expect = 6.1
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 547 NVCNVDMDCPDNAFC-RLN--SYCVCKEGYVY 633
N C D C DN+ C +L+ S+C+C EGY Y
Sbjct: 175 NPCQDD-PCADNSLCVKLHNTSFCLCLEGYYY 205
>AC005026-1|AAP21869.1| 376|Homo sapiens unknown protein.
Length = 376
Score = 30.3 bits (65), Expect = 6.1
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = -2
Query: 566 MSTLQTLPVRRFSGPCAVARPRRATKISCHPPISSLPVINFGAGTAHRVWQRSLAPVSEN 387
M L + RFS P ARP R +S IS L +F T R SL + N
Sbjct: 145 MEYLHAMDSTRFSSPRLSARPSRKRTLS----ISPLSDHSFDLQTMIRTSPNSLVTILNN 200
Query: 386 GRTIGNPAGS 357
R+ + +GS
Sbjct: 201 SRSSSSASGS 210
>AB035807-1|BAB19651.1| 512|Homo sapiens down-regulated in colon
cancer 1 protein.
Length = 512
Score = 30.3 bits (65), Expect = 6.1
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 547 NVCNVDMDCPDNAFC-RLN--SYCVCKEGYVY 633
N C D C DN+ C +L+ S+C+C EGY Y
Sbjct: 175 NPCQDD-PCADNSLCVKLHNTSFCLCLEGYYY 205
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,552,824
Number of Sequences: 237096
Number of extensions: 2320773
Number of successful extensions: 6504
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6492
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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