Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13k08
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.7  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +1

Query: 193 RSSIRLFLYFFVCVSFRTFFYNQTYYRACFC--YLKAATSYVITSKFYQETRARACLLPA 366
           R+ + + L+ F   S  T F N     A     YL  AT+Y +TS  + +     CL+  
Sbjct: 45  RAGLAILLFLF---SVATVFGNTLVILAVVRERYLHTATNYFVTSLAFAD-----CLV-- 94

Query: 367 GLPIVLPFS 393
           GL +V+PFS
Sbjct: 95  GL-VVMPFS 102


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 607 SNCSVCRKRYPDSPCRRCKRYRSVVSR 527
           S CS+C++R+ +     C +   + +R
Sbjct: 272 SKCSLCQRRFEEQGNYSCLKVDLIFTR 298


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 289 LKAATSYVITSKFYQETRARACLLPAGLPIVLP 387
           +K A   V   +FY+    RAC    G+P   P
Sbjct: 568 VKGAVWTVDEVEFYKRRPQRACSTTGGVPSKSP 600


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,247
Number of Sequences: 438
Number of extensions: 4788
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)