Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13k02
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    29   0.18 
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    28   0.42 
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   0.96 
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   1.7  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    24   9.0  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    24   9.0  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    24   9.0  

>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 29.5 bits (63), Expect = 0.18
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 14  NNLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIP 166
           ++L +  +  NN D+  ++  +  K  AD       EI   IEN  DL +P
Sbjct: 231 DSLRERFVDNNNSDYI-FNVSYHKKIPADGFSLYTREIWDTIENNKDLDLP 280


>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 28.3 bits (60), Expect = 0.42
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 14  NNLPKHDIGENNEDFEDYDADFETKTSADDSG-NMLEEIMQCIENKNDLSIPN 169
           NNLP++ + EN + FE+  A  E +    + G N++E I+    + N  +IPN
Sbjct: 112 NNLPEYILIENVQGFEESKAAEECRKVLRNCGYNLIEGIL----SPNQFNIPN 160


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -2

Query: 149 FYFQCTALFLPTCFRCHLRLFLSQSQRHNLRNLHYFHRYRVSVNYSSL 6
           F+ Q T  +   CF     L L          LH+FH + ++  + SL
Sbjct: 28  FFLQMTPFYSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYHYSL 75


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 363 NKNKHFIFKLVSEF-EFIHSNTKHYSGKLTGKNNLD 259
           NKN+        +  EF+HS+TK  SG+   + N D
Sbjct: 9   NKNESIQLAAADQLKEFVHSSTKELSGESLARFNND 44


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +2

Query: 23  PKHDI-GENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPERL 187
           P H I  E+NE   +Y  + + + S  ++ ++ EE +  +++KN+  + +  PE++
Sbjct: 183 PIHRIDSEHNEP--EYHTESKNEESEHNTKSIREEPIHHVDSKNEEPVYSKIPEKM 236


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 243  KWCYSFKNIILSSP 202
            KWCY   + I+SSP
Sbjct: 1200 KWCYYIGSYIMSSP 1213


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 74  DFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPER 184
           +FET  S  + GN+LE++ + + NK        +PE+
Sbjct: 96  EFETVESKGE-GNLLEQVARTVYNKRHNISEVSEPEK 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,368,856
Number of Sequences: 5004
Number of extensions: 27818
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)