Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13k02
(375 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0358 + 16725417-16725422,16725789-16725858,16727825-167286... 29 1.6
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908... 27 3.6
10_08_0055 - 14505747-14506934 27 3.6
02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948... 27 3.6
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219... 27 4.8
11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460 27 6.3
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 27 6.3
08_02_0473 + 17586507-17587004,17587146-17588145,17588314-175885... 26 8.4
05_04_0096 - 17931061-17931435,17931539-17931620,17932319-179324... 26 8.4
03_05_0190 - 21770610-21770641,21770741-21770811,21771058-217711... 26 8.4
>11_04_0358 +
16725417-16725422,16725789-16725858,16727825-16728693,
16729109-16729198,16730071-16730356,16730573-16730592
Length = 446
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 53 DFEDYDADFETKTSADDSGNMLEE 124
D +DYD DFE ++DD G E
Sbjct: 88 DDDDYDIDFEVDATSDDDGGFTVE 111
>12_01_0919 -
9086879-9087064,9087842-9087923,9088357-9089553,
9089598-9089961,9090086-9090188,9090234-9090479
Length = 725
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 47 NEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLS 160
+E FE YD DF T G+ ++ ++ + +KND+S
Sbjct: 454 HEGFESYDIDFSTADGVSVLGDAVDLVI--LWHKNDIS 489
>10_08_0055 - 14505747-14506934
Length = 395
Score = 27.5 bits (58), Expect = 3.6
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +2
Query: 14 NNLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPERLCP 193
+ LP+ + E E+ ED D D+E + + M+E ++ + N + + +RLC
Sbjct: 261 DTLPETNPQELEEEEEDDDDDYEDDQA--QAAAMVEHLLIAADRYNLERLKLICEDRLCK 318
Query: 194 NRNGED--KIIFLNE*H 238
+ +GE I+ L E H
Sbjct: 319 HIDGESVATILALAEQH 335
>02_05_0036 -
25292150-25293124,25294021-25294206,25294704-25294874,
25295135-25295353,25295461-25295712,25295802-25295903,
25296487-25296684,25296762-25297046,25297640-25297709,
25297797-25297970,25298825-25298952,25299059-25299163,
25299686-25300030,25300361-25300563,25300964-25301045,
25301667-25301744
Length = 1190
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 47 NEDFEDYDADFETKTSA-DDSGNMLEEIMQCIENKNDLSIPNLDPER 184
NE+ ++ D ET+ + DD LEE + ++ K L NL+ ER
Sbjct: 6 NENSKEAKQDDETRQNKQDDEEARLEEYKKLVDQKTALRRSNLNSER 52
>12_01_0292 +
2193309-2193338,2193565-2193640,2193744-2195203,
2195479-2195505,2195794-2196024,2196523-2196692,
2197278-2197421,2198036-2198083,2198503-2198566
Length = 749
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 11 KNNLP-KHDIGENNEDFEDYDADFETKTSADDSG 109
K NLP + D G++ +F+D +F+ + DD G
Sbjct: 191 KFNLPPEDDFGDDGSEFDDEFDEFDDEDDFDDDG 224
>11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460
Length = 515
Score = 26.6 bits (56), Expect = 6.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 23 PKHDIGENNEDFEDYDADFETKTSADDSG 109
P+ D G++ +F+D +F+ + DD G
Sbjct: 198 PEDDFGDDGSEFDDEFDEFDDEDDFDDDG 226
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 26.6 bits (56), Expect = 6.3
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 29 HDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPERLCPNRNGE 208
HD GE NED +D D D +D+ + ++ + E+ D+ I N+ E P G+
Sbjct: 42 HDSGEGNEDIDD-DFDINDGEGNEDTNDDVDIDDEGNED-TDVDI-NVRVENGAPETRGK 98
Query: 209 DKI 217
K+
Sbjct: 99 TKL 101
>08_02_0473 +
17586507-17587004,17587146-17588145,17588314-17588566,
17588647-17588757,17588845-17588905,17588994-17589086,
17589164-17589349
Length = 733
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 47 NEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLS 160
+E +E YD DF T+ G+ ++ ++ + +KND+S
Sbjct: 237 HEGYESYDVDFLTQDGVSVLGDAVDLVI--LWHKNDIS 272
>05_04_0096 -
17931061-17931435,17931539-17931620,17932319-17932446,
17932523-17932621,17932739-17932894,17934120-17934194,
17934582-17934749,17934825-17934993,17936640-17936923
Length = 511
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 20 LPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDL 157
L +DI NNE + YD FE S G + + Q + ++D+
Sbjct: 300 LTPYDICFNNETWNYYDQGFEKMISGVYLGEIARLVFQKMAEESDI 345
>03_05_0190 -
21770610-21770641,21770741-21770811,21771058-21771168,
21771249-21771500,21771584-21772086,21772188-21773234,
21773361-21773768,21773814-21773956,21774020-21774053
Length = 866
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 47 NEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLS 160
++ FE YD DF T G+ ++ ++ + +KND+S
Sbjct: 445 HDGFESYDIDFSTADGVSVLGDAVDLVI--LWHKNDIS 480
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,704,794
Number of Sequences: 37544
Number of extensions: 142145
Number of successful extensions: 393
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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