Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13j24
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    24   1.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.7  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   6.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   8.1  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 189 HNKHSTSNNTYNLVTNKFTNLNIMFQ 112
           HN ++ +NN YN     + N+N + Q
Sbjct: 91  HNNNNYNNNNYNNYKKLYYNINYIEQ 116


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 189 HNKHSTSNNTYNLVTNKFTNLN 124
           HN ++ +NN YN   N + N N
Sbjct: 324 HNNNNYNNNNYNNNYNNYNNNN 345


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 167 TTLTI*SPINSQI*I*CFNDNYST 96
           TT+T  SP  SQ  + C   NYST
Sbjct: 755 TTITARSPQGSQGLLQCATSNYST 778


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 189 HNKHSTSNNTYNLVTNKFTNLNIMFQ 112
           +N ++ +NN YN     + N+N + Q
Sbjct: 101 YNNYNYNNNNYNNYKKLYYNINYIEQ 126


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +3

Query: 339 FA*LGAVCECRTAMSHHSDEHALLTTTSDSFWEPGNYKRTTKRVDDGH 482
           F  + A+C C  AM+H   +  + T       E G  ++    V +G+
Sbjct: 4   FVIIFAICVCVGAMTHEELKTGIQTLQPICVGETGTSQKIIDEVYNGN 51


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 204 ILLQRHNKHSTSNNTYNLVTNKFTNLNIMF 115
           I+    NK   +NN YN   NK    NI +
Sbjct: 303 IISSLSNKTIHNNNNYNNYNNKKLYYNINY 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,188
Number of Sequences: 438
Number of extensions: 4336
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)