Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13j06
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    27   0.15 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.8  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 612 QAKCTPLAYDLRFDLCMTGKVPSYSC-GQAASH 517
           + + TP+ + L++  C+   +PSY+C G+ +S+
Sbjct: 28  ECQATPVIHFLQYPGCVPKPIPSYACRGRCSSY 60


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 570  LCMTGKVPSYSC--GQAASHSCSGCARHHCAEPSLGAVKRRKR 448
            +C T + P  SC  G  A  + S   + HC E +  A+K +KR
Sbjct: 1701 ICFTMR-PVVSCASGCTAVETKSKPYKFHCMEKNEAAMKLKKR 1742


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 531 QAASHSCSGCARH 493
           +A SHSC  C  H
Sbjct: 273 EAGSHSCEACPAH 285


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 38  PSHQLDQQRAVRVLINNVK*NVSDQITLLYI 130
           P+H  DQ +  ++ INN   N +++    YI
Sbjct: 120 PNHTSDQHKWFQMSINNTNNNNTNKYKDYYI 150


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 123 CTSFDTAPSVLSRCEPNENN 182
           CT       VL  C+ N NN
Sbjct: 206 CTEATAGAVVLETCQRNSNN 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,749
Number of Sequences: 438
Number of extensions: 3363
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)