Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13h16
         (314 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   0.66 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   0.66 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   0.66 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   2.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   3.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   8.1  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 0.66
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 313 FFFD*IFYLQLHKLFL*FRQILEYSKPF 230
           FF D I  + L  +FL F Q  ++S+ F
Sbjct: 169 FFLDLISSIPLDYIFLIFNQFQDFSESF 196


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 0.66
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 313 FFFD*IFYLQLHKLFL*FRQILEYSKPF 230
           FF D I  + L  +FL F Q  ++S+ F
Sbjct: 169 FFLDLISSIPLDYIFLIFNQFQDFSESF 196


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 0.66
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 313 FFFD*IFYLQLHKLFL*FRQILEYSKPF 230
           FF D I  + L  +FL F Q  ++S+ F
Sbjct: 169 FFLDLISSIPLDYIFLIFNQFQDFSESF 196


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 246 SSI*RNHKNNLCSCK*NIQSKK 311
           S+I RNH N+ CS   +   KK
Sbjct: 338 STIVRNHLNSTCSVTNSPHQKK 359


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 86  HLIKSLIFRLNVLDEINDSAGIT 18
           H+  SLI   + L E+N S  IT
Sbjct: 290 HIKDSLIVLTSALQEMNKSKSIT 312


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 267 CDFVKYLNIANHFYKY 220
           CD+ + LN+   +Y Y
Sbjct: 42  CDYYQNLNLGEIYYIY 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,057
Number of Sequences: 438
Number of extensions: 1210
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)