Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13g23
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 87  LTSPTAIVSFSVATFF*ITTRLGEKMS 7
           L  PT ++SF     F +    GEK++
Sbjct: 240 LILPTVLISFLCVLVFYLPAEAGEKVT 266


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 614 IYAIPNRHKFGGSPREGLPFQ 552
           I+  P R       +EG+PFQ
Sbjct: 597 IFGFPGRLLLPRGKKEGMPFQ 617


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 611 YAIPNRHKFGGSPREGLPFQ*CVLGFPF 528
           Y  P R       +EG+P+   V+  PF
Sbjct: 596 YGFPERLLLPKGKKEGMPYNVLVVVSPF 623


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 614 IYAIPNRHKFGGSPREGLPFQ 552
           I+  P R       +EG+PFQ
Sbjct: 597 IFGFPGRLLLPRGKKEGMPFQ 617


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 379 TRTK*INVVVIVVFRCW 329
           T T+ ++ VVI  F CW
Sbjct: 257 TITRMLSAVVITFFICW 273


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 611 YAIPNRHKFGGSPREGLPFQ*CVLGFPF 528
           Y  P R       +EG+P+   V+  PF
Sbjct: 596 YGFPERLLLPKGKKEGMPYNVLVVVSPF 623


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,116
Number of Sequences: 438
Number of extensions: 3198
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)