Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f24
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    31   0.67 
U41023-2|AAA82341.1|  335|Caenorhabditis elegans Sphingomyelin s...    29   2.7  
U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidas...    28   4.7  
Z92829-4|CAD54131.1|  569|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 443 HLDTFDLPHATVTITSIARFHATFANYETK-NILNGRSEYNFYKQHEHL 586
           H   F  P+A V+ +S  + H  FAN  T  N+ N +S  NF    +H+
Sbjct: 107 HESPFSHPNADVSPSSPQQLHLAFANATTSTNVTNAKSTTNFDGYLKHI 155


>U41023-2|AAA82341.1|  335|Caenorhabditis elegans Sphingomyelin
           synthase protein 2 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 423 RAIVLGTTWIPSTYHTRQSPLRPSLVST 506
           RA++LG T++P ++H R    +P +  T
Sbjct: 146 RAVILGVTFLPPSFHNRDEICQPQVNRT 173


>U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical
           protein C14C11.3 protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/54 (20%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +2

Query: 32  NNLRSNLSDVFSEKQLSQIVKSSVGEGGKVIDGYVKPV--ADGIAGFLGDHFKV 187
           ++LR+++ D++ E  + + +  ++GE  + + GY++ +   D +  +   HF +
Sbjct: 541 SDLRASMKDLYFENTIDEFIYENLGEMSEKLHGYLEEIQRLDKLRAWPKRHFPI 594


>AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/54 (20%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +2

Query: 32  NNLRSNLSDVFSEKQLSQIVKSSVGEGGKVIDGYVKPV--ADGIAGFLGDHFKV 187
           ++LR+++ D++ E  + + +  ++GE  + + GY++ +   D +  +   HF +
Sbjct: 541 SDLRASMKDLYFENTIDEFIYENLGEMSEKLHGYLEEIQRLDKLRAWPKRHFPI 594


>Z92829-4|CAD54131.1|  569|Caenorhabditis elegans Hypothetical
           protein F10A3.4 protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +3

Query: 429 IVLGTTWIPSTYHTRQSPL-RPSLVSTQPSLITRLRISSTEEV 554
           I+  TT +P+T  T Q+PL   ++++T+P+L T+  + +T+ V
Sbjct: 468 IIGSTTTLPTTT-TTQTPLPTTTILTTRPALTTQSTVFTTQAV 509


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -2

Query: 186 TLK*SPRNPAMPSATGLTYPSITFPPSPT 100
           T K SP+    PS T  T  S T PPS T
Sbjct: 420 TTKTSPKPTTSPSTTTSTTTSTTIPPSTT 448


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 216 TCPLTCTSKVTLK*SPRNPAMPSATGLTYPSITFPPSPTDDLT 88
           T P+  TS  T   +P NP  P+      P  T  P+ T   T
Sbjct: 651 TAPVNPTSSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTTSTT 693


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 216 TCPLTCTSKVTLK*SPRNPAMPSATGLTYPSITFPPSPTDDLT 88
           T P+  TS  T   +P NP  P+      P  T  P+ T   T
Sbjct: 707 TAPVNPTSSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTTSTT 749


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 216 TCPLTCTSKVTLK*SPRNPAMPSATGLTYPSITFPPSPTDDLT 88
           T P+  TS  T   +P NP  P+      P  T  P+ T   T
Sbjct: 530 TAPVNPTSSTTAPTAPVNPTSPTTAPTVPPVTTTTPTTTTSTT 572


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,227,147
Number of Sequences: 27780
Number of extensions: 260678
Number of successful extensions: 822
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)