Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f22
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0206 - 21580240-21580467,21580544-21580591,21581533-215823...    29   1.7  
09_02_0580 + 10884012-10884081,10884173-10884419,10884472-108847...    29   2.2  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   2.2  
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    27   6.8  
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142...    27   9.0  
04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839...    27   9.0  
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    27   9.0  

>09_06_0206 -
           21580240-21580467,21580544-21580591,21581533-21582321,
           21582779-21582979
          Length = 421

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 195 FLKQRTNPWKNASEAGYVFDTALQRFLSMKV 287
           F+ QR   W N S     +DT L RF+++K+
Sbjct: 44  FVAQRKLGWGNFSTVWLAYDTLLNRFVALKI 74


>09_02_0580 +
           10884012-10884081,10884173-10884419,10884472-10884735,
           10885630-10886093,10888326-10888396
          Length = 371

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 186 RREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSL 329
           RR    Q    WKN S A  + DT+L   + + V Q     V+  TSL
Sbjct: 202 RRWLRMQLDRTWKNLSTASTIKDTSLDYAVPLPVMQTAAEAVSNETSL 249


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 132 SDAELNLIKTQASRRAEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQ 293
           S + L   +T+  RRA  +RE+ KQR    KN         T LQ+   ++  Q
Sbjct: 148 SKSALPRAETEEERRARKKREYEKQRAEDRKNQQMMRQSQATVLQKTQQVRAAQ 201


>04_04_1197 +
           31672019-31672325,31672431-31672740,31673334-31678335,
           31678677-31678715
          Length = 1885

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -3

Query: 338 KSKQTSSL--VYG--KIFKLCYFHGQKPLQCCVENITSLRSVFP 219
           KS++  SL   YG  +  KLCY H   PLQ CV    S  S+FP
Sbjct: 548 KSEEWKSLQQAYGIMQALKLCYDHLSNPLQQCV----SYCSLFP 587


>04_04_1500 +
           34010819-34011016,34013267-34013308,34014195-34014204,
           34014526-34014586,34014621-34014678,34015266-34015412,
           34015643-34016205,34018942-34019728
          Length = 621

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 413 SQWRAPLQRQTLQASLITDELVHNRKYIVNIMLKK 517
           SQWRA   +Q ++     + L H + ++ ++  +K
Sbjct: 85  SQWRAERIKQQIKVHFCANRLAHRKLFVASLSFEK 119


>04_04_1285 -
           32382614-32382720,32383032-32383710,32383816-32383926,
           32384007-32384065,32384163-32384271,32384387-32384575,
           32384650-32385476,32385501-32385633
          Length = 737

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +3

Query: 117 NNYG-----LSDAELNLIKTQASRRAEMRREFLKQRTNPWKNA 230
           NNYG     L D    +  T  +R A++ R ++  +TN +KNA
Sbjct: 328 NNYGERFERLMDRATMIFNTLLTRAAKIPRNYIIDQTNVYKNA 370


>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 222  KNASEAGYVFDTALQRFLSMKVTQFEYFTVN 314
            ++++E GY    ALQ F+ MK   +E F+ +
Sbjct: 1163 RSSTERGYSKSRALQAFIEMKEVTYEKFSAS 1193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,473,300
Number of Sequences: 37544
Number of extensions: 239403
Number of successful extensions: 548
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)