Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f20
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   6.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   6.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 230 LTSKYILSTICKSNSIRALSTTYSRNAKVTFDWVDPFNLDGQLHDDEKAVRD 385
           +T+KY+ +T+  +  +   ST  S +A  +  W+     D +  D    V D
Sbjct: 1   MTAKYVFTTLINAAFLCLASTILSESAGTSCKWLSEGGNDTRSADCTLRVLD 52


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 362 DDEKAVRDSFRAYCNEKLLP 421
           D+E+ VRD FR Y N+ + P
Sbjct: 26  DEERLVRDLFRGY-NKLIRP 44


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = +2

Query: 227 SLTSKYILSTICKSNSIRALSTTYSRNAKVTFDWVDPFNLDGQLHDDEKAVRDSFRAYCN 406
           SL+ + I+ +  +  S R  S+   R +  +     P  L  Q H D    +     +CN
Sbjct: 10  SLSQRKIIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCN 69

Query: 407 ---EKLLPRVVEANRNE 448
              EKL    +E++ ++
Sbjct: 70  QDTEKLNQLEIESDNSK 86


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 151 NSSSTNFTRNLNITYK 104
           NSS  N T  LN+ +K
Sbjct: 26  NSSGKNLTNTLNVIHK 41



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 486 NSPSSL*ISLWNTSFLFASTTRGNN 412
           NSPSS  +   NT  L  S  +GN+
Sbjct: 267 NSPSSENLYYVNTESLMKSENQGND 291


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 254 TICKSNSIRALSTTYSRNAKVTFDWVDPFNLDGQLHDDEKAVRDSF 391
           T+ KS S+ +L+    +N  +T      +  DGQ+  D +   D F
Sbjct: 224 TLRKSPSLTSLNAYLIKNQTITCPIKVSWRADGQIMVDYEDEFDEF 269


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 395 AYCNEKLLPRVVEANRNEVFHREIYNE 475
           ++C +++L  V   + N V HR++  E
Sbjct: 12  SHCIQQILESVHHCHHNGVVHRDLKPE 38


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 426 TRGNNFSL 403
           TRGNNFSL
Sbjct: 313 TRGNNFSL 320


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,118
Number of Sequences: 438
Number of extensions: 3032
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)