Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f18
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.14 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   0.76 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.8  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   5.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    20   9.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    20   9.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 26.2 bits (55), Expect = 0.14
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 270  INLYIFFSYTYTEFGRLDSIERSLSREQFVKKPYPWNLIR 151
            ++LY        E G LD I  +LSRE   KK Y  +LI+
Sbjct: 1013 LDLYRQEKEEMVELGVLDKIFLALSRESGFKKTYVQDLIQ 1052


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = -3

Query: 189 QFVKKPYPWNLIRGSMQTTHASKNCNY*VNKRIIIYYQHVTPPLISKVTHSNYIY*NKT 13
           +F+K P P N++  S+   +  +N    +N   +  Y      +   V  SN++   +T
Sbjct: 187 RFLKNPRPCNVLATSLTEPYTLRNYGRRINCTYVALYPSSVQVIALGVGVSNFLSSTRT 245


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 173 GFLTNCSRDRLRSIESNRPNSVYVYEKNIYKLMYIVDIV 289
           GFLT+CS D L        N + ++   I+   Y + ++
Sbjct: 192 GFLTSCSFDYLTD-----TNEIRIFVATIFTFSYCIPMI 225


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +3

Query: 153 ELSSTDKVF*QIVHETDFARLNPIDRTLCTYTKKIYIN 266
           E S   K+   + +  +++  N  +     Y KK+Y N
Sbjct: 74  ERSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKLYYN 111


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 173 GFLTNCSRDRLRSIESNR 226
           GFLT CS D L   E  +
Sbjct: 201 GFLTTCSFDFLTDDEDTK 218


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = +2

Query: 113 LQFFDAWVVCMDPRI 157
           L  +  W+ C+DP +
Sbjct: 586 LAVYGVWINCLDPNL 600


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 173 GFLTNCSRDRLRSIESNR 226
           GFLT CS D L   E  +
Sbjct: 201 GFLTTCSFDFLTDDEDTK 218


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 256 IFFVYVHRVRSIGFNRAKSVS 194
           +FF+YVH   +   +  K VS
Sbjct: 134 LFFIYVHPSATFSLDLNKVVS 154


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -1

Query: 323 NKNITYSVNIRKQCLQYTLIYIYFFRIRTQSSVDWIQSSE 204
           NK + Y++N  +Q      + IY+     +    WI   E
Sbjct: 323 NKKLYYNINYIEQIPVPVPVPIYYGNFPPRPMGPWISMQE 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,042
Number of Sequences: 438
Number of extensions: 2139
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)