Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f16
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    28   1.0  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    27   1.8  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    27   2.3  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   3.1  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    26   4.1  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    25   5.4  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   7.1  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   7.1  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    25   9.4  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.4  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 293 SYVYCPYCNKAWKGWDINSYKEHPNHHGEPLSYRGVYIHLDF 418
           S VY P CN+ W   D N  +E      E + Y  ++  L F
Sbjct: 145 SEVYVPPCNRVWYSDDTNEVEEKGIRPSE-VRYANIFSKLSF 185


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 305 CPYCNKAWKGWDI-NSYKEHPNHHGEPLSYR 394
           C Y +   + WDI N  K HP + G+P+SY+
Sbjct: 515 CDYNSDTSRTWDICNPNKLHP-YSGKPVSYK 544


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 294 VTSTVRIATKPGKDGTSILTKNIRTITGN 380
           VTS++ I +KP K G+ +   NI   +G+
Sbjct: 283 VTSSISIVSKPSKKGSKLKISNITLRSGS 311


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 236 HRSNTSYNLCS-RKVSVSFWITQSCTIELREYDTKYTGVLY 117
           H  N  YN    R+ +  FW+     +E++ Y  ++  VLY
Sbjct: 188 HEHNVDYNSSMYRRRTFRFWVHPDNVMEVKTYIMRHLPVLY 228


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 114 HIKYPSVFSIIFT*FNCAALSNPE*NRDLAAAK 212
           ++ YP   SI     +C+ALSN E   D+A  K
Sbjct: 243 YLNYPKRKSITHLHHDCSALSNGENGEDVADGK 275


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 302 YCPYCNKAWKGWDINSYKEHPN 367
           Y PY N + + W+  SY++ P+
Sbjct: 258 YTPYLNDSSEAWEKESYEKSPS 279


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 389 YRGVYIHLDFISELEEQILIDNIDEIPW 472
           YR  Y H+D IS + + +  D +  +P+
Sbjct: 363 YRNAYHHIDSISHVNQSLKEDALRTLPY 390


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 350  YKEHPNHHGEPLSYRGVYIHLDFISELEEQILIDNIDEIPW 472
            YK+  N      S+  V++H  F+SE+  Q +    D + W
Sbjct: 1749 YKKFLNEPLPMESHLQVWLHDAFVSEISTQTIESKQDAVDW 1789


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 108 TNI*CYMNNKLNNIETCCEI 49
           T+I C +  K NN+ET C++
Sbjct: 28  TSIICTIGPKSNNVETLCKL 47


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 235 TDQTRPTTFAAARSRFHSGLLKA 167
           TDQ RP  F     +FHS   KA
Sbjct: 171 TDQGRPVAFELPPDKFHSDQSKA 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,264
Number of Sequences: 5004
Number of extensions: 38793
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)