Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f16
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1056 - 30447791-30447850,30448020-30448085,30448299-304485...    37   0.009
06_03_0590 + 22574985-22578018,22578125-22578469,22579171-225792...    31   0.44 
05_04_0288 + 19839597-19839821,19841882-19842107,19842494-198425...    28   4.1  
04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571     28   5.4  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    28   5.4  
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536...    27   7.2  
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440...    27   7.2  
07_03_1248 - 25165929-25166891,25169159-25169473                       27   9.5  

>04_04_1056 -
           30447791-30447850,30448020-30448085,30448299-30448583,
           30448744-30448869,30449068-30449154,30449273-30449695
          Length = 348

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +2

Query: 383 LSYRGVYIHLDFISELEEQILIDNIDEIPWDNSQSGRRKQNYG 511
           L   G+Y+  DF++  EEQ L+  +D  PW  S + RR Q+YG
Sbjct: 123 LGVPGIYLVPDFVTAAEEQELLAAVDNRPW-KSLAKRRVQHYG 164


>06_03_0590 +
           22574985-22578018,22578125-22578469,22579171-22579217,
           22579450-22579573,22579622-22579686
          Length = 1204

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -2

Query: 356 LCKN*CPILSRLCCNTDSRRNFFLCLVPTAISGLQHRIVFHRSNTSYNLCS 204
           LC   C IL  +C  T+  R   LC   + +SG   R +   SNTS N CS
Sbjct: 17  LCTFFCSILLAICNETEYDRQALLCF-KSQLSG-PSRALSSWSNTSLNFCS 65


>05_04_0288 +
           19839597-19839821,19841882-19842107,19842494-19842582,
           19845184-19845387,19845463-19845717,19845796-19846011,
           19846611-19846766,19846880-19847039,19847702-19847788,
           19847789-19847940,19848006-19848143,19848714-19848788,
           19849166-19849444
          Length = 753

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 404 IHLDFISELEEQILIDNIDEIPWDN 478
           +H+D  S+ E +IL D ID + +DN
Sbjct: 491 VHMDIDSDYERRILNDLIDSVTFDN 515


>04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571
          Length = 740

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 242 VFHRSNTSYNLCSRKVSVSFWITQSCTIELREYDTKY 132
           V H ++  YN C R  SV  WI    +   R+Y  ++
Sbjct: 56  VSHLNDRCYNFCVRDKSVGLWIYNLRSYICRDYHMRF 92


>01_05_0279 +
           20318440-20318688,20318785-20318931,20319449-20319611,
           20319770-20319887,20320607-20320676,20320774-20320854,
           20320924-20320959,20321129-20321149,20321586-20321642,
           20321716-20321827,20321905-20322178,20322454-20322556,
           20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 206 SRKVSVSFWITQSCTIELREYDTKYTGVLYMRELIYNA 93
           +R   V+   T+ CTIEL   D   +  L+ +E  +NA
Sbjct: 835 TRMQEVALLATKKCTIELAPLDAHCSWQLFCKEAFWNA 872


>03_02_1033 +
           13550955-13551700,13552837-13553290,13553451-13553648,
           13553726-13553807,13554496-13554590
          Length = 524

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 317 NKAWKGWDINSYKEHPNHHGEPLSYRGVYIHLD 415
           +K W+ WD+++ KE     G   S  GV  H D
Sbjct: 335 DKTWRLWDVSTGKELLLQEGHSRSVYGVSFHPD 367


>03_02_1031 +
           13541327-13542072,13543209-13543662,13543823-13544020,
           13544098-13544179,13544868-13544962
          Length = 524

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 317 NKAWKGWDINSYKEHPNHHGEPLSYRGVYIHLD 415
           +K W+ WD+++ KE     G   S  GV  H D
Sbjct: 335 DKTWRLWDVSTGKELLLQEGHSRSVYGVSFHPD 367


>07_03_1248 - 25165929-25166891,25169159-25169473
          Length = 425

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 383 LSYRGVYIHLDFISELEEQILIDNI--DEIPWDNSQSGRRKQNYGPKVN 523
           LS RGV   LD + E+E+    DN+   +  +D  ++   KQ    KV+
Sbjct: 357 LSVRGVEPTLDQVEEIEDDCSSDNVASPDSNYDKEKNDSNKQKPSKKVS 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,173,779
Number of Sequences: 37544
Number of extensions: 232042
Number of successful extensions: 603
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)