Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f11
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.25 
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   7.0  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   7.0  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   7.0  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   9.3  

>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 322 RNTCGAPAVPPLSRQHPSCRDRARPTLST 408
           R   GAPA+P L  +HPS +   R T ST
Sbjct: 418 RKPTGAPAIPKLPPKHPSRQPTVRATPST 446


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 471 DEYRQTTDEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRK 599
           D    ++D + +   P    G N F  L       EDDQAL K
Sbjct: 436 DTQETSSDSKLAEVKPKGKNGGNRFHELDPFVYIKEDDQALEK 478


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 333 WRACGPALKPSASVLPRPRSSYSLYTVSQAYHYLFRQH 446
           W    PA  PS     R  SS+  YT+SQA +  F QH
Sbjct: 130 WGNYNPAFLPS-----RYDSSFHPYTISQAANQPFPQH 162


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +1

Query: 334 GAPAVPPLSRQHPSCRDRARPTLSTP*AKRTTIFSDSTKNLFSPSSMSTARPRTSND 504
           G+P  PP      +      P L+TP    +++   S   +  P+ MS   P  S++
Sbjct: 498 GSPQFPPFELPPHNYSQAQSPNLATPSPSFSSLPDVSLPPIVKPNLMSEPTPTNSDE 554


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 255 EAEQVSD-FERILNTNAILCERAKKHVWRACGPALKPSASVL 377
           E EQ+S    ++LN+N+   E   K+   A G  ++PS  +L
Sbjct: 40  ELEQISPGIRQMLNSNSEFLEECSKYYTIAQGKQMRPSLVLL 81


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 204 TVGSGKETENKLLLQIREAEQVSDFERI 287
           T    K   NKL +Q R+A ++ DF RI
Sbjct: 143 TADKTKVDGNKLSIQPRKANRIVDFSRI 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,284
Number of Sequences: 5004
Number of extensions: 43923
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)