Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f11
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110487-5|CAB54428.1|  237|Caenorhabditis elegans Hypothetical ...    33   0.23 
AC024859-1|ABA00161.2|  443|Caenorhabditis elegans Hypothetical ...    31   0.70 
AC006627-9|AAK85464.1|  367|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z81533-12|CAB04333.2|  356|Caenorhabditis elegans Hypothetical p...    29   3.7  
U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.           29   3.7  
U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein rec...    29   3.7  
U61944-2|AAL56621.1|  705|Caenorhabditis elegans Dynamin related...    29   3.7  
U61944-1|AAL56622.1|  712|Caenorhabditis elegans Dynamin related...    29   3.7  
AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor...    29   3.7  
AF166274-1|AAD49861.1|  705|Caenorhabditis elegans dynamin-relat...    29   3.7  
AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor medi...    29   3.7  
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AL110487-5|CAB54428.1|  237|Caenorhabditis elegans Hypothetical
           protein Y39E4B.6 protein.
          Length = 237

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 19/57 (33%), Positives = 34/57 (59%)
 Frame = +3

Query: 162 QLIKQVADNKRLCQTVGSGKETENKLLLQIREAEQVSDFERILNTNAILCERAKKHV 332
           +L+++  D + L + +GS KETEN+ L  +  A  +S  E + +T AI+  ++K  V
Sbjct: 179 ELLERDQDTQVLTRELGS-KETENRHLRSLLSAHGISPDEPVTSTTAIVVGQSKSPV 234


>AC024859-1|ABA00161.2|  443|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.9 protein.
          Length = 443

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +3

Query: 357 KPSASVLPRPRSSYSLYTVSQAYHYLFRQH------EKSLQPLIDEYRQTTDEQR 503
           KP  S+    +S++ LYT+++ YH   + H      E   +PL+   ++ TD +R
Sbjct: 92  KPVLSLTHHGKSNHQLYTLTEVYHKALKVHGSTEALEAHRRPLVAMRKELTDAER 146


>AC006627-9|AAK85464.1|  367|Caenorhabditis elegans Hypothetical
           protein E01A2.7 protein.
          Length = 367

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +3

Query: 255 EAEQVSDFERILNTNAILCERAKKHVWRACGPALKPSASVLPRPRSSYSLYTVSQAYHYL 434
           E +++S+ E +   +    +  + H+W  C P +K +A  L     S +LY  SQ     
Sbjct: 253 EIQKISEIETLTGCDNFYVD-TQDHLWAGCHPVVKDAAGHLGNVSDS-TLYGPSQVLRVS 310

Query: 435 FRQHEKSLQ 461
           F +  K+ +
Sbjct: 311 FSKDLKTAE 319


>Z81533-12|CAB04333.2|  356|Caenorhabditis elegans Hypothetical
           protein F36G9.1 protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 224 LFSAADSLTQPLVVGDLFYKLSRFRKGTSSK 132
           LF+   SL  P+V G L Y     +K TSS+
Sbjct: 232 LFTVIPSLILPIVTGTLIYFFKTLKKSTSSR 262


>U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 438 RQHEKSLQPLIDEYRQTTDEQRSACP 515
           R+ E +  P+++++R+ TD+QRS  P
Sbjct: 833 RKAEDAAAPIVEKFRKVTDKQRSTPP 858


>U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein
           receptor precursor protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 438 RQHEKSLQPLIDEYRQTTDEQRSACP 515
           R+ E +  P+++++R+ TD+QRS  P
Sbjct: 833 RKAEDAAAPIVEKFRKVTDKQRSTPP 858


>U61944-2|AAL56621.1|  705|Caenorhabditis elegans Dynamin related
           protein protein1, isoform a protein.
          Length = 705

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 492 DEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRKEVETITDRI 626
           DE +      +LL ++W       S+ + D  A+RKE+E  TDR+
Sbjct: 76  DESKRRRSNGTLLTDDWAMFEHTGSKVFTDFDAVRKEIEDETDRV 120


>U61944-1|AAL56622.1|  712|Caenorhabditis elegans Dynamin related
           protein protein1, isoform b protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 492 DEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRKEVETITDRI 626
           DE +      +LL ++W       S+ + D  A+RKE+E  TDR+
Sbjct: 76  DESKRRRSNGTLLTDDWAMFEHTGSKVFTDFDAVRKEIEDETDRV 120


>AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor
           RME-2 protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 438 RQHEKSLQPLIDEYRQTTDEQRSACP 515
           R+ E +  P+++++R+ TD+QRS  P
Sbjct: 833 RKAEDAAAPIVEKFRKVTDKQRSTPP 858


>AF166274-1|AAD49861.1|  705|Caenorhabditis elegans dynamin-related
           protein protein.
          Length = 705

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 492 DEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRKEVETITDRI 626
           DE +      +LL ++W       S+ + D  A+RKE+E  TDR+
Sbjct: 76  DESKRRRSNGTLLTDDWAMFEHTGSKVFTDFDAVRKEIEDETDRV 120


>AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor
           mediated endocytosis protein2 protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 438 RQHEKSLQPLIDEYRQTTDEQRSACP 515
           R+ E +  P+++++R+ TD+QRS  P
Sbjct: 833 RKAEDAAAPIVEKFRKVTDKQRSTPP 858


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical protein
            C05C10.2b protein.
          Length = 1553

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 198  CQTVGSGKETENKLLLQIREAEQVSDFERILNTNAILCERAKK 326
            C TV + + +E ++++     E++SDF ++ N   +   RAK+
Sbjct: 1394 CGTVDAFQGSEKEIIIMCSTNERISDFMQLSNRLNVAMSRAKQ 1436


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical protein
            C05C10.2a protein.
          Length = 1551

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 198  CQTVGSGKETENKLLLQIREAEQVSDFERILNTNAILCERAKK 326
            C TV + + +E ++++     E++SDF ++ N   +   RAK+
Sbjct: 1394 CGTVDAFQGSEKEIIIMCSTNERISDFMQLSNRLNVAMSRAKQ 1436


>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical
           protein K04D7.5b protein.
          Length = 1287

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 426 HYLFRQHEKSLQPLIDEYRQTTDEQRSAC--PPSSLLGNNWFDNLQDLSEFYEDDQALRK 599
           H + +  EK +  L+   +   +     C  PP+S  G  W+   Q+     E+ + LRK
Sbjct: 577 HQIMQAAEKGVCKLVLPLKSWQESDTPICQWPPASQPG--WYRRFQETFNVTEERKILRK 634

Query: 600 EVETI 614
            V T+
Sbjct: 635 HVSTM 639


>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical
           protein K04D7.5a protein.
          Length = 1338

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 426 HYLFRQHEKSLQPLIDEYRQTTDEQRSAC--PPSSLLGNNWFDNLQDLSEFYEDDQALRK 599
           H + +  EK +  L+   +   +     C  PP+S  G  W+   Q+     E+ + LRK
Sbjct: 577 HQIMQAAEKGVCKLVLPLKSWQESDTPICQWPPASQPG--WYRRFQETFNVTEERKILRK 634

Query: 600 EVETI 614
            V T+
Sbjct: 635 HVSTM 639


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,834,779
Number of Sequences: 27780
Number of extensions: 260717
Number of successful extensions: 1039
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)