Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f10
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    28   1.4  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   4.2  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    26   4.2  
SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   9.7  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
 Frame = +1

Query: 565 LRTFC--CHH----SVKFHLFICNFRYVLYGV 642
           LR+ C  CHH     VK HLF C  + + YG+
Sbjct: 99  LRSTCLYCHHFKLSKVKVHLFFCRLKLLDYGL 130


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -2

Query: 470  DVFV*ILIHLTTLNFGNLTRNESTKSFFGKYCEVFAVPLWNRLQ 339
            D+F  + I  T  N G   +N   K F      V AVPL N LQ
Sbjct: 1228 DIFAGLFIGFTFYNQGLGVQNIQNKLFAVFMATVLAVPLINGLQ 1271


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 419 LTRNESTKSFFGKYCEVFAVPL 354
           +TRNE+ + FF K+C V  VP+
Sbjct: 58  MTRNEA-EDFFFKFCTVICVPV 78


>SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 72 HLCYKLQLSHNTILVNLLHIPG 7
          H+  KL L HNT L N+L + G
Sbjct: 21 HVNTKLILPHNTFLTNILFLLG 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,956
Number of Sequences: 5004
Number of extensions: 55067
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)