Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f08
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   2.9  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   3.8  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   3.8  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    26   5.1  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    26   5.1  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    25   6.7  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   8.9  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 416 SDTNQPTKYKKIYSKCSFGKNYVKTNYCIVLFKIKHF 526
           SD N  +K    +SK  F  +Y K+ +    F IKH+
Sbjct: 539 SDENWVSKLNDAFSKPEFKNSYQKSRFGNKEFTIKHY 575


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 364 YHHNKANFYSSSICKGMPSQ-LYPQ 293
           Y H  A  YSS+ C G+PS  L PQ
Sbjct: 306 YSHRTAEGYSSNSCLGIPSYFLNPQ 330


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 364 YHHNKANFYSSSICKGMPSQ-LYPQ 293
           Y H  A  YSS+ C G+PS  L PQ
Sbjct: 306 YSHRTAEGYSSNSCLGIPSYFLNPQ 330


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +1

Query: 1   ELHFLVCFAKSLKMYVVSNLVKVTIPN----YLSSLPI 102
           E   L+C   SLK+  VS L+ V  P     Y+S  P+
Sbjct: 365 ETDLLICIGTSLKVAPVSELISVIPPTTPQIYISRTPV 402


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 19 CFAKSLKMYVVSNLVKVTIPNYLSSLP 99
          C  KSL++Y +SN ++   PN +S+LP
Sbjct: 8  CEEKSLQLYPLSNKIRHVNPN-ISALP 33


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 73  IPNYLSSLPIPDSVGGWFR 129
           I NYL ++ IPD V  W++
Sbjct: 21  IVNYLKTINIPDDVTEWYK 39


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/52 (19%), Positives = 26/52 (50%)
 Frame = +1

Query: 40  MYVVSNLVKVTIPNYLSSLPIPDSVGGWFRLGVKDWLALIPPTVVVGGISYY 195
           M+    +V VT+   + +  + + +  +  +    W+ ++PP++V    SY+
Sbjct: 807 MFPKGGVVSVTLSALIKTPRLLELISPFLEIKKDSWILILPPSIVDMVKSYF 858


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,515
Number of Sequences: 5004
Number of extensions: 52042
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)