Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13f08
(624 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537971-1|CAD97935.1| 150|Homo sapiens hypothetical protein pr... 120 6e-27
BC032300-1|AAH32300.1| 135|Homo sapiens CDGSH iron sulfur domai... 120 6e-27
BC059168-1|AAH59168.1| 108|Homo sapiens CDGSH iron sulfur domai... 96 8e-20
BC008474-1|AAH08474.1| 108|Homo sapiens zinc finger, CDGSH-type... 96 8e-20
BC007043-1|AAH07043.1| 108|Homo sapiens zinc finger, CDGSH-type... 96 8e-20
BC005962-1|AAH05962.1| 108|Homo sapiens zinc finger, CDGSH-type... 96 8e-20
AY960578-1|AAY32336.1| 108|Homo sapiens zinc finger CDGSH-type ... 96 8e-20
AF220049-1|AAF67642.1| 108|Homo sapiens uncharacterized hematop... 96 8e-20
S66431-1|AAB28544.1| 1722|Homo sapiens retinoblastoma binding pr... 31 3.3
BC003517-1|AAH03517.2| 533|Homo sapiens ATXN7L1 protein protein. 31 4.4
>BX537971-1|CAD97935.1| 150|Homo sapiens hypothetical protein
protein.
Length = 150
Score = 120 bits (288), Expect = 6e-27
Identities = 57/128 (44%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Frame = +1
Query: 49 VSNLVKVTIPNYLSSLPIPDSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQT-IKKARE 225
V+ +VKV +P YL LP+P+S+ G+ RL V +WL L+P V+ + Y + + + K ++
Sbjct: 21 VARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQ 80
Query: 226 AGSGQINPCIRKDINKVVDFIDIEDIT-EKASLCRCWRSKNWPYCDGSHGPHNKETGDNT 402
IN I+K+ KVV+ I+IED+ KA+ CRCWRSK +P CDGSH HN+ TGDN
Sbjct: 81 QKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNV 140
Query: 403 GPVVVRHK 426
GP++++ K
Sbjct: 141 GPLILKKK 148
>BC032300-1|AAH32300.1| 135|Homo sapiens CDGSH iron sulfur domain 2
protein.
Length = 135
Score = 120 bits (288), Expect = 6e-27
Identities = 57/128 (44%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Frame = +1
Query: 49 VSNLVKVTIPNYLSSLPIPDSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQT-IKKARE 225
V+ +VKV +P YL LP+P+S+ G+ RL V +WL L+P V+ + Y + + + K ++
Sbjct: 6 VARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQ 65
Query: 226 AGSGQINPCIRKDINKVVDFIDIEDIT-EKASLCRCWRSKNWPYCDGSHGPHNKETGDNT 402
IN I+K+ KVV+ I+IED+ KA+ CRCWRSK +P CDGSH HN+ TGDN
Sbjct: 66 QKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNV 125
Query: 403 GPVVVRHK 426
GP++++ K
Sbjct: 126 GPLILKKK 133
>BC059168-1|AAH59168.1| 108|Homo sapiens CDGSH iron sulfur domain 1
protein.
Length = 108
Score = 96.3 bits (229), Expect = 8e-20
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = +1
Query: 142 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 321
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 322 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 426
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>BC008474-1|AAH08474.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 96.3 bits (229), Expect = 8e-20
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = +1
Query: 142 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 321
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 322 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 426
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>BC007043-1|AAH07043.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 96.3 bits (229), Expect = 8e-20
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = +1
Query: 142 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 321
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 322 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 426
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>BC005962-1|AAH05962.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 96.3 bits (229), Expect = 8e-20
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = +1
Query: 142 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 321
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 322 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 426
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>AY960578-1|AAY32336.1| 108|Homo sapiens zinc finger CDGSH-type
domain 1 protein.
Length = 108
Score = 96.3 bits (229), Expect = 8e-20
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = +1
Query: 142 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 321
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 322 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 426
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>AF220049-1|AAF67642.1| 108|Homo sapiens uncharacterized
hematopoietic stem/progenitor cells protein MDS029
protein.
Length = 108
Score = 96.3 bits (229), Expect = 8e-20
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = +1
Query: 142 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 321
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 322 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 426
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>S66431-1|AAB28544.1| 1722|Homo sapiens retinoblastoma binding protein
2 protein.
Length = 1722
Score = 31.1 bits (67), Expect = 3.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 247 PCIRKDINKVVDFIDIEDITEKASLCRCWRSK-NWPYCDG 363
PC K + V +I++I+ K+ LC C+ K +W CDG
Sbjct: 1623 PCKDKGVVFVTKKREIKNISFKSVLCDCFSKKVDWVQCDG 1662
>BC003517-1|AAH03517.2| 533|Homo sapiens ATXN7L1 protein protein.
Length = 533
Score = 30.7 bits (66), Expect = 4.4
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +1
Query: 28 KSLKMYVVSNLVKVTIPNYLSSLPIPDSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQT 207
K KM ++++ K P+ L+ P+PD V V+D LA PP+ +GG ++
Sbjct: 451 KITKMPGMNSVHKKNPPSLLA--PVPDPVNSTSSRQVRDLLA--PPSPALGGRGSWAAPL 506
Query: 208 IKKAREAGSGQINPCI 255
+ +A G+ + P +
Sbjct: 507 LSRAAPTGNTSLIPVL 522
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,647,865
Number of Sequences: 237096
Number of extensions: 1854014
Number of successful extensions: 4151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4147
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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