Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f07
         (289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   0.41 
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    25   2.9  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    24   5.0  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    23   6.7  
SPBC1685.13 |||non classical export pathway protein |Schizosacch...    23   8.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    23   8.8  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    23   8.8  

>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 27.5 bits (58), Expect = 0.41
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 108 YFTFHVLEFSSSNYLTEK 161
           YF FH+  F  +NY TE+
Sbjct: 389 YFIFHIKRFMKNNYFTER 406


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 131 VFFQ*LFN*KMLGQQLRVAASHAEACMGRMXAWRIHAYGPTTE 259
           +F   L+   ++ ++ R+   H + C+    AWR    GP +E
Sbjct: 84  IFIGPLYEVWIVDKEYRLFFIHLKDCLSNAIAWRNIIIGPLSE 126


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 150 NNYWKKTQEHEM*NNNNCIFLIFYFNLXKL 61
           N  WKKT+  +   +    FL  YF L +L
Sbjct: 433 NLSWKKTELRDFGQSPELCFLCLYFFLIRL 462


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 186 ATLNCCPNIFQLN 148
           A ++CCPN+  LN
Sbjct: 340 AIVDCCPNLISLN 352


>SPBC1685.13 |||non classical export pathway protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 99  CIFLIFYFNLXKLKFVVYLHFXRN 28
           C FL F F L    F+V +   +N
Sbjct: 131 CFFLWFMFGLYVASFIVQIFIAKN 154


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 99  CIFLIFYFNLXKLK 58
           CIFL FYF   K++
Sbjct: 310 CIFLYFYFRRFKIR 323


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 108 NNNCIFLIFYFNLXKLKF 55
           N NC++  FY  + +LK+
Sbjct: 37  NENCVYRQFYRKIKRLKY 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 928,408
Number of Sequences: 5004
Number of extensions: 13561
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)