Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f07
         (289 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88311-3|AAB42345.1|  526|Caenorhabditis elegans Udp-glucuronosy...    27   1.6  
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr...    27   2.2  
U88311-2|AAB42350.2|  529|Caenorhabditis elegans Udp-glucuronosy...    27   2.9  
U97003-1|AAB52270.2|  527|Caenorhabditis elegans Udp-glucuronosy...    25   6.6  
U88311-4|AAB42344.1|  537|Caenorhabditis elegans Udp-glucuronosy...    25   6.6  

>U88311-3|AAB42345.1|  526|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein27 protein.
          Length = 526

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 262 QLSSRSIXVYSPRXHSSHTSFSMRCCNS 179
           Q++S ++ VYSP   +SHT+F  R  ++
Sbjct: 15  QVNSINVLVYSPAFAASHTNFMARLADT 42


>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical
           protein F20B10.1 protein.
          Length = 1180

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 288 GGTRASSSLNSVVGPXACIRHAXIRPIQAS 199
           GGT  SSS+   +GP  C   A   P+  S
Sbjct: 673 GGTTKSSSIEVEIGPLKCRNRATFDPVTFS 702


>U88311-2|AAB42350.2|  529|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein26 protein.
          Length = 529

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -1

Query: 265 SQLSSRSIXVYSPRXHSSHTSFSMRCCNSQLLS*H---FSVK*LLEENSRT*NVK 110
           S +SS +I V+SP   +SHT+F  R  ++   + H   F V   LEE      VK
Sbjct: 17  SLVSSLNILVHSPAYAASHTNFMARLADTLTEAGHNVTFLVPIALEERRDKLGVK 71


>U97003-1|AAB52270.2|  527|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein32 protein.
          Length = 527

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 265 SQLSSRSIXVYSPRXHSSHTSFSMRCCNS 179
           S   S  + VYSP   +SHT+F  R  ++
Sbjct: 15  SNTDSLRVLVYSPAYAASHTNFMARLADT 43


>U88311-4|AAB42344.1|  537|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein28 protein.
          Length = 537

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 283 YACFFQSQLSSRSIXVYSPRXHSSHTSF 200
           ++ FF S  SS +I VYSP   +SH++F
Sbjct: 8   FSSFFCST-SSLNILVYSPAFAASHSNF 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,114,200
Number of Sequences: 27780
Number of extensions: 76495
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)