Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f06
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.97 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 456 ELNPVRTL*GVSLKIYSDFRQDLLERYNH 370
           ELN +RT  G S K+ +D   +  E Y H
Sbjct: 56  ELNALRTELGASTKLATDTTSENEENYPH 84


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = +3

Query: 6   VISRYLTKNVIAEVFKLKTDSDEDIENIELT-----KAAPNGEGLLSAVYRIKVTGKRYS 170
           +  R   KNV+ ++ K+K      + NIE +     K A +   L +  +  + T  RYS
Sbjct: 162 IFEREEIKNVLTKINKIKEHDTVLVVNIEKSENESKKYATSSNSLRNRTHGFQHTSSRYS 221


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 402 SRCKSLTKHPTKCERDSVLETLAHLHA 482
           ++C +L + P+KC + SV  +    H+
Sbjct: 353 TKCNTLERTPSKCSQTSVHYSNGQTHS 379


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 57  KTDSDEDIENIELTKAAPN 113
           K D + D ENI+  K  PN
Sbjct: 88  KDDDESDNENIKSQKEFPN 106


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 393 DLLERYNH*RRPDNNHN 343
           DLL  YN   RP +N+N
Sbjct: 27  DLLSNYNRLIRPVSNNN 43


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 450 SVLETLAHLHAVSMTLRIKKPD 515
           +VLE L H    + TL  K+PD
Sbjct: 645 TVLEELTHGTLAASTLYSKRPD 666


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 450 SVLETLAHLHAVSMTLRIKKPD 515
           +VLE L H    + TL  K+PD
Sbjct: 645 TVLEELTHGTLAASTLYSKRPD 666


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 450 SVLETLAHLHAVSMTLRIKKPD 515
           +VLE L H    + TL  K+PD
Sbjct: 645 TVLEELTHGTLAASTLYSKRPD 666


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,798
Number of Sequences: 438
Number of extensions: 3037
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)