Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f03
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   6.2  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   8.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   8.1  

>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = +3

Query: 9   LVLQTVSVVPCHQLYKFLDDFLSNFYSKTNNH*ENLRMMWNNKHSQ*QYIN 161
           LVL+  +++P   + +F +      +   N +    + +WNNK  + + +N
Sbjct: 29  LVLRKSNILPLQHILRFSNFASKQCFPLRNGNNSASKALWNNKSKEKEPLN 79


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 221 QPHRRGVACL*AEGTAHLERHL 286
           QP +R +AC    G  H+ +HL
Sbjct: 517 QPEKRNLACGGLNGNVHIYKHL 538


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 352 SLLLCQDL*RTHCC*KREFRTKQMSFQVRSPFS 254
           SL+LC    R   C KRE R+K+      SP+S
Sbjct: 479 SLILCT---RNGTCWKRELRSKKREKSSSSPYS 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,114
Number of Sequences: 5004
Number of extensions: 44966
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)