Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt13f03
(586 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 25 0.41
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 3.9
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 21 8.9
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 21 8.9
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 21 8.9
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 21 8.9
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 21 8.9
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 21 8.9
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 21 8.9
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 21 8.9
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 21 8.9
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 21 8.9
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 21 8.9
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 25.4 bits (53), Expect = 0.41
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 168 LQIMVL*PFIVMPVDADYNRTDVVSLVCELKGLRT 272
LQ+ V +IV P D R V+L C+ +G+ T
Sbjct: 704 LQVKVPPRWIVEPTDVSVERNKHVALHCQAQGVPT 738
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 22.2 bits (45), Expect = 3.9
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 54 KFLDDFLSNF-YSKTNNH*ENLRMMWNNKHSQ*QYINFVLQI 176
K + +N+ YS NN+ +NN + + Y N+++ I
Sbjct: 313 KIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYIINI 354
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 8.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 72 LSNFYSKTNNH*ENLRMMWNNKHSQ*QYINFVLQIMV 182
LSN Y+ +N + N +NN IN++ QI V
Sbjct: 85 LSNNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPV 121
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 8.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 72 LSNFYSKTNNH*ENLRMMWNNKHSQ*QYINFVLQIMV 182
LSN Y+ +N + N +NN IN++ QI V
Sbjct: 85 LSNNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPV 121
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 8.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 72 LSNFYSKTNNH*ENLRMMWNNKHSQ*QYINFVLQIMV 182
LSN Y+ +N + N +NN IN++ QI V
Sbjct: 85 LSNNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPV 121
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 8.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 72 LSNFYSKTNNH*ENLRMMWNNKHSQ*QYINFVLQIMV 182
LSN Y+ +N + N +NN IN++ QI V
Sbjct: 85 LSNNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPV 121
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 8.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 72 LSNFYSKTNNH*ENLRMMWNNKHSQ*QYINFVLQIMV 182
LSN Y+ +N + N +NN IN++ QI V
Sbjct: 85 LSNNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPV 121
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 8.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 72 LSNFYSKTNNH*ENLRMMWNNKHSQ*QYINFVLQIMV 182
LSN Y+ +N + N +NN IN++ QI V
Sbjct: 85 LSNNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPV 121
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 8.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 72 LSNFYSKTNNH*ENLRMMWNNKHSQ*QYINFVLQIMV 182
LSN Y+ +N + N +NN IN++ QI V
Sbjct: 85 LSNNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPV 121
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 21.0 bits (42), Expect = 8.9
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = +1
Query: 34 CLVINCISFW 63
CL + C++FW
Sbjct: 387 CLTVVCLAFW 396
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.9
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +2
Query: 374 NCCAEHKPDVTW 409
+CC E PD+T+
Sbjct: 194 SCCPEPYPDITY 205
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 21.0 bits (42), Expect = 8.9
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 202 CRWMLTTTAQTWCRLFVS*RDC 267
C+ T TA T C+L+ R C
Sbjct: 174 CKRTATITAATDCQLWAIDRQC 195
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 21.0 bits (42), Expect = 8.9
Identities = 7/19 (36%), Positives = 9/19 (47%)
Frame = +2
Query: 356 YTTNKENCCAEHKPDVTWP 412
YTTN+ + C WP
Sbjct: 127 YTTNESHACLSTGGSCYWP 145
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,513
Number of Sequences: 438
Number of extensions: 3175
Number of successful extensions: 20
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -