Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt13f01
         (219 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022975-3|AAB70674.1|  548|Caenorhabditis elegans Hypothetical ...    26   3.2  
U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiestera...    25   5.5  
U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiestera...    25   5.5  
U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiestera...    25   5.5  
U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiestera...    25   5.5  
U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiestera...    25   5.5  
U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiestera...    25   5.5  
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    25   7.3  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    25   7.3  
AL023835-11|CAA19495.1|  335|Caenorhabditis elegans Hypothetical...    25   7.3  
AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical...    25   7.3  
Z73427-8|CAA97804.1|  302|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AF022975-1|AAB70675.3|  587|Caenorhabditis elegans Hypothetical ...    25   9.6  
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    25   9.6  

>AF022975-3|AAB70674.1|  548|Caenorhabditis elegans Hypothetical
           protein K09C6.8 protein.
          Length = 548

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 46  IIGTLFLLICYIRHLNNHFSKNHHFGFEAA 135
           +IG + +++C    LN +    +HF F AA
Sbjct: 79  VIGNMGMVVCRYLALNQYHQTIYHFHFRAA 108


>U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforma protein.
          Length = 549

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 67  LICYIRHLNNHFSKNHHFGFEAAA 138
           L+ Y+ +L +H+  NH+  F  AA
Sbjct: 265 LVTYLLNLEHHYRNNHYHNFIHAA 288


>U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformd protein.
          Length = 674

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 67  LICYIRHLNNHFSKNHHFGFEAAA 138
           L+ Y+ +L +H+  NH+  F  AA
Sbjct: 390 LVTYLLNLEHHYRNNHYHNFIHAA 413


>U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformc protein.
          Length = 599

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 67  LICYIRHLNNHFSKNHHFGFEAAA 138
           L+ Y+ +L +H+  NH+  F  AA
Sbjct: 315 LVTYLLNLEHHYRNNHYHNFIHAA 338


>U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforme protein.
          Length = 612

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 67  LICYIRHLNNHFSKNHHFGFEAAA 138
           L+ Y+ +L +H+  NH+  F  AA
Sbjct: 328 LVTYLLNLEHHYRNNHYHNFIHAA 351


>U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformb protein.
          Length = 626

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 67  LICYIRHLNNHFSKNHHFGFEAAA 138
           L+ Y+ +L +H+  NH+  F  AA
Sbjct: 342 LVTYLLNLEHHYRNNHYHNFIHAA 365


>U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformg protein.
          Length = 673

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 67  LICYIRHLNNHFSKNHHFGFEAAA 138
           L+ Y+ +L +H+  NH+  F  AA
Sbjct: 389 LVTYLLNLEHHYRNNHYHNFIHAA 412


>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform a protein.
          Length = 1212

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 12  FHSNRISWNSCNNWNFISINL 74
           F  NRIS      WNFI +N+
Sbjct: 63  FTDNRISTTKYTFWNFIPLNI 83


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform b protein.
          Length = 1454

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 12  FHSNRISWNSCNNWNFISINL 74
           F  NRIS      WNFI +N+
Sbjct: 63  FTDNRISTTKYTFWNFIPLNI 83


>AL023835-11|CAA19495.1|  335|Caenorhabditis elegans Hypothetical
          protein Y37A1B.12 protein.
          Length = 335

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 21 NRISWNSCNNWN 56
          NR +WN  NNWN
Sbjct: 23 NRTNWNLKNNWN 34


>AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical
           protein Y27F2A.11 protein.
          Length = 327

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 7   TFFIATGFHGIHVIIGTLFLLIC 75
           +F I  GF+G  VI+ T  +L C
Sbjct: 277 SFVILLGFNGSQVIVETFLVLAC 299


>Z73427-8|CAA97804.1|  302|Caenorhabditis elegans Hypothetical
           protein F58B3.8 protein.
          Length = 302

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -3

Query: 217 FFLINFLINK*KCKEIIILHLQNVNIKLQLQIQSDDF*KSDYLNVEYSKLIEIKFQ 50
           F  I F+I    C   + LH+Q+ +I+  +   S +F        E SK++ +K +
Sbjct: 8   FLFITFIIESIICSGYLELHIQSPHIQTAIVNISSNF------RTEKSKIVHLKLK 57


>AF022975-1|AAB70675.3|  587|Caenorhabditis elegans Hypothetical
           protein K09C6.7 protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 46  IIGTLFLLICYIRHLNNHFSKNHHFGFEAA 135
           +IG +  ++C    LN +    +HF F AA
Sbjct: 264 VIGNMGRVVCRYLALNQYHQTIYHFHFRAA 293


>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
           protein T05C3.2 protein.
          Length = 1733

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 31  HGIHVIIGTLFLLICYIRHLNN 96
           HGI  +       +CYIRH+NN
Sbjct: 303 HGILKVKNPNEHCLCYIRHINN 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,700,750
Number of Sequences: 27780
Number of extensions: 48001
Number of successful extensions: 254
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)